hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00211498/chunk_1/iprscan-20080502-00211498.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0344 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 233.7 1.6e-65 1 SM00219 80.7 1.7e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 153 411 .. 1 280 [] 80.7 1.7e-19 SM00220 1/1 153 411 .. 1 231 [] 233.7 1.6e-65 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 153 to 411: score 80.7, E = 1.7e-19 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr l+++ ++G+G F +VykG +++++eVA L++ + ++++++ F + KIAA0344 153 LKFDIEIGRGSFKTVYKGLDTettVEVAWCELQDRKltkseRQRFKE 199 EakiMkklGgkHpNiVkLl....GvcteegrrFmevePlmivmEymegGd Ea+++k l +HpNiV+++++ + + + + + +v+E+m G KIAA0344 200 EAEMLKGL--QHPNIVRFYdsweSTVKGK-------KCIVLVTELMTSGT 240 LldyLrknrpklslsdLlsfAlQIAkGMeYLesk..nfvHRDLAARNcLv L+ yL++ + + + L s++ QI kG ++L+ ++++++HRDL + N+ + KIAA0344 241 LKTYLKRFKV-MKIKVLRSWCRQILKGLQFLHTRtpPIIHRDLKCDNIFI 289 genk.vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP + + + vKI+D GL+ +k+++ + + mAP KIAA0344 290 TGPTgSVKIGDLGLATLKRAS----FAKSVIGT-----PEF------MAP 324 EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk E ++ + + DV++FG ++ E+ t + + +++++++++ KIAA0344 325 EMYEEK-YDESVDVYAFGMCMLEMATSEYPYSEC-----QNAAQIYRRVT 368 kGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl +G + + + + +e+ ++++ C + + ++R + ++l ++ ++ KIAA0344 369 SGVKPASFDKV-------AIPEVKEIIEGCIRQNKDERYSIKDLlnHAFF 411 <-* KIAA0344 - - SM00220: domain 1 of 1, from 153 to 411: score 233.7, E = 1.6e-65 *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr ++ ++G+G+F +Vy++ d++t +vA ++ +++ ++++++r++ KIAA0344 153 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQdrkltkserQRFKE 199 EikiLkk.dHPNIVkLydvfed.....dklylVmEyceGdlGdLfdllkk E ++Lk +HPNIV++yd++e++ ++++++ lV+E++ G+L+++lk+ KIAA0344 200 EAEMLKGlQHPNIVRFYDSWEStvkgkKCIVLVTELMTS--GTLKTYLKR 247 rgrrglrkvlsE.earfyfrQilsaLeYLHsq..gIiHRDLKPeNiLLds + + ++ r+++rQil++L++LH +++ IiHRDLK +Ni+++ KIAA0344 248 FKV------MKIkVLRSWCRQILKGLQFLHTRtpPIIHRDLKCDNIFITG 291 ...hvKlaDFGlArql.....ttfvGTpeYmAPEvl..gYgkpavDiWSl +++ vK++D GlA++ + + ++++GTpe+mAPE+ +++Y+ +vD++++ KIAA0344 292 ptgSVKIGDLGLATLKrasfaKSVIGTPEFMAPEMYeeKYDE-SVDVYAF 340 GcilyElltGkpPFp...qldlifkkig............SpeakdLikk G ++ E++t + P+++ ++ ++i++++ ++ ++ + ++ pe+k++i++ KIAA0344 341 GMCMLEMATSEYPYSecqNAAQIYRRVTsgvkpasfdkvaIPEVKEIIEG 390 lLvkdPekRlta.eaLedeldikaHPff<-* + + + ++R++++++L+ H ff KIAA0344 391 CIRQNKDERYSIkDLLN-------HAFF 411 //