hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00211498/chunk_1/iprscan-20080502-00211498.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0344 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 216.4 5.8e-62 1 PF00069.15.fs Protein kinase domain 214.6 2.1e-61 1 PF07714.7.fs Protein tyrosine kinase 88.3 1.6e-25 2 PF07714.7.ls Protein tyrosine kinase 84.6 2.8e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07714.7.fs 1/2 153 216 .. 1 71 [. 38.0 6e-11 PF00069.15.fs 1/1 153 411 .. 1 287 [] 214.6 2.1e-61 PF07714.7.ls 1/1 153 411 .. 1 272 [] 84.6 2.8e-22 PF00069.15.ls 1/1 153 411 .. 1 287 [] 216.4 5.8e-62 PF07714.7.fs 2/2 231 370 .. 87 234 .. 50.2 1.7e-14 Alignments of top-scoring domains: PF07714.7.fs: domain 1 of 2, from 153 to 216: score 38.0, E = 6e-11 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei lk++ ++G+G+F +VykG + +t+++VA L+ + + +e KIAA0344 153 LKFDIEIGRGSFKTVYKGLDT----ETTVEVAWCELqDR-KLTKSE- 193 eredFlrEAsiMkklGdHpNiVrLl<-* r+ F +EA+++k l +HpNiVr++ KIAA0344 194 -RQRFKEEAEMLKGL-QHPNIVRFY 216 PF00069.15.fs: domain 1 of 1, from 153 to 411: score 214.6, E = 2.1e-61 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +++ +G+Gsf tVyk+ + t +VA ++ rk ++++++ KIAA0344 153 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKE 199 lsEiqilkrLsHpNIvrlidvfed....kdhlylVlEycegGLrvldLfd E+++lk L+HpNIvr++d++e++ ++k+ + lV+E++ G L++ KIAA0344 200 --EAEMLKGLQHPNIVRFYDSWEStvkgKKCIVLVTELMTSG----TLKT 243 ylsetrrkgpllfsedeakkialQilrgleYLHsn..giiHRDLKPeNIL yl+ r +++ ++++++++Qil+gl++LH +++ iiHRDLK +NI+ KIAA0344 244 YLK---RFKVM--KIKVLRSWCRQILKGLQFLHTRtpPIIHRDLKCDNIF 288 ld.nngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggn + + +g v Ki+D GlA +++ s ++++ GTp++mAPE + KIAA0344 289 ITgPTGSV----KIGDLGLAT---LkRASfAKSVIGTPEFMAPEM--YEE 329 gygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefd +y+ +vDv+++G + e++t + P+s++ + q++r++ ++ + + KIAA0344 330 KYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYRRVTSGVKPAS 375 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< +++ +e k++i++c++++ +R++++++l+H +f KIAA0344 376 FDKVAI-------------PEVKEIIEGCIRQNKDERYSIKDLLNHAFF 411 -* KIAA0344 - - PF07714.7.ls: domain 1 of 1, from 153 to 411: score 84.6, E = 2.8e-22 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei lk++ ++G+G+F +VykG + +t+++VA L+ + + +e KIAA0344 153 LKFDIEIGRGSFKTVYKGLDT----ETTVEVAWCELqDR-KLTKSE- 193 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpg.lyiVtEymegG r+ F +EA+++k l +HpNiVr++ g+ + +VtE+m G KIAA0344 194 -RQRFKEEAEMLKGL-QHPNIVRFYDSWES-TVK-GKKcIVLVTELMTSG 239 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLeskn..fvHRDLAARN L+++L++ + ++k L s+++Qi kG+++L+ + ++++HRDL + N KIAA0344 240 TLKTYLKR---FKVMKIKVLRSWCRQILKGLQFLHTRTppIIHRDLKCDN 286 cLVsenl.vVKIsDFGLaRdiynddyYvrkkgggklPv...kWmAPEslk + ++ + + VKI+D GLa + r++ +k ++++ mAPE + KIAA0344 287 IFITGPTgSVKIGDLGLATLK-------RASF-AKSVIgtpEFMAPE-MY 327 ygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.sneevlellyedGyRLp + k+ + DV++FG ++ E+ t e P Y +++ ++++ ++ +G + KIAA0344 328 EEKYDESVDVYAFGMCMLEMAT-SEYP-YSECqNAAQIYRRV-TSGVKPA 374 rPen.CPdelYdlMlqCWaedPedRPtFsel..veeL<-* ++ + +e+ +++ C + + ++R + ++l ++ ++ KIAA0344 375 SFDKvAIPEVKEIIEGCIRQNKDERYSIKDLlnHAFF 411 PF00069.15.ls: domain 1 of 1, from 153 to 411: score 216.4, E = 5.8e-62 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +++ +G+Gsf tVyk+ + t +VA ++ rk ++++++ KIAA0344 153 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKE 199 lsEiqilkrLsHpNIvrlidvfed....kdhlylVlEycegGLrvldLfd E+++lk L+HpNIvr++d++e++ ++k+ + lV+E++ G L++ KIAA0344 200 --EAEMLKGLQHPNIVRFYDSWEStvkgKKCIVLVTELMTSG----TLKT 243 ylsetrrkgpllfsedeakkialQilrgleYLHsn..giiHRDLKPeNIL yl+ r +++ ++++++++Qil+gl++LH +++ iiHRDLK +NI+ KIAA0344 244 YLK---RFKVM--KIKVLRSWCRQILKGLQFLHTRtpPIIHRDLKCDNIF 288 ld.nngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggn + + +g v Ki+D GlA +++ s ++++ GTp++mAPE + KIAA0344 289 ITgPTGSV----KIGDLGLAT---LkRASfAKSVIGTPEFMAPEM--YEE 329 gygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefd +y+ +vDv+++G + e++t + P+s++ + q++r++ ++ + + KIAA0344 330 KYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYRRVTSGVKPAS 375 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< +++ +e k++i++c++++ +R++++++l+H +f KIAA0344 376 FDKVAI-------------PEVKEIIEGCIRQNKDERYSIKDLLNHAFF 411 -* KIAA0344 - - PF07714.7.fs: domain 2 of 2, from 231 to 370: score 50.2, E = 1.7e-14 *->iVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLeskn +VtE+m G L+++L++ + ++k L s+++Qi kG+++L+ + KIAA0344 231 LVTELMTSGTLKTYLKR---FKVMKIKVLRSWCRQILKGLQFLHTRT 274 ..fvHRDLAARNcLVsenl.vVKIsDFGLaRdiynddyYvrkkgggklPv ++++HRDL + N+ ++ + + VKI+D GLa + r++ +k + KIAA0344 275 ppIIHRDLKCDNIFITGPTgSVKIGDLGLATLK-------RASF-AKSVI 316 ...kWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.sneev +++ mAPE + + k+ + DV++FG ++ E+ t e P Y +++ +++ KIAA0344 317 gtpEFMAPE-MYEEKYDESVDVYAFGMCMLEMAT-SEYP-YSECqNAAQI 363 lellyedG<-* + ++ +G KIAA0344 364 YRRV-TSG 370 //