hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00141321/chunk_1/iprscan-20080502-00141321.nocrc
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Query sequence: KIAA0340
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.fs C2 domain                                       97.9    1.5e-28   1
PF00168.20.ls C2 domain                                       99.9    7.2e-27   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          44.0    1.1e-11   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          46.0    1.2e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/1     619   702 ..     1    86 []    44.0  1.1e-11
PF00595.14.ls   1/1     619   702 ..     1    86 []    46.0  1.2e-10
PF00168.20.fs   1/1     773   864 ..     1    88 []    97.9  1.5e-28
PF00168.20.ls   1/1     773   864 ..     1    88 []    99.9  7.2e-27

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 1, from 619 to 702: score 44.0, E = 1.1e-11
                   *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr
                        t++k+ ++  lG++++gg+  + +  g+f+++v +G + A++ G 
    KIAA0340   619    RTTMPKD-SGALLGLKVVGGKMTDLgRLGAFITKVKKG-SLADVVGH 663  

                   LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   L+aGD +l+ NG++l + + ee+  ++ +s++ e +++++   
    KIAA0340   664 LRAGDEVLEWNGKPLPGATNEEVYNIILESKS-EPQVEII    702  

PF00595.14.ls: domain 1 of 1, from 619 to 702: score 46.0, E = 1.2e-10
                   *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr
                        t++k+ ++  lG++++gg+  + +  g+f+++v +G + A++ G 
    KIAA0340   619    RTTMPKD-SGALLGLKVVGGKMTDLgRLGAFITKVKKG-SLADVVGH 663  

                   LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   L+aGD +l+ NG++l + + ee+  ++ +s++ e +++++   
    KIAA0340   664 LRAGDEVLEWNGKPLPGATNEEVYNIILESKS-EPQVEII    702  

PF00168.20.fs: domain 1 of 1, from 773 to 864: score 97.9, E = 1.5e-28
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L V+v++A +Lp++   ++  +PYVk+y+++d++d++k++Tk++kk 
    KIAA0340   773    LIVNVLQATDLPARV-DGRPRNPYVKMYFLPDRSDkSKRRTKTVKKI 818  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgr..ddflGevs<-*
                   l P+WN+tF++++v+  d+ e++Lei+V+D  r+  ++ +flGe+    
    KIAA0340   819 LEPKWNQTFVYShVHRRDFRErMLEITVWDQPRVQEeeSEFLGEIL    864  

PF00168.20.ls: domain 1 of 1, from 773 to 864: score 99.9, E = 7.2e-27
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L V+v++A +Lp++   ++  +PYVk+y+++d++d++k++Tk++kk 
    KIAA0340   773    LIVNVLQATDLPARV-DGRPRNPYVKMYFLPDRSDkSKRRTKTVKKI 818  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgr..ddflGevs<-*
                   l P+WN+tF++++v+  d+ e++Lei+V+D  r+  ++ +flGe+    
    KIAA0340   819 LEPKWNQTFVYShVHRRDFRErMLEITVWDQPRVQEeeSEFLGEIL    864  

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