hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00105851/chunk_1/iprscan-20080502-00105851.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0338 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00373.8.fs FERM domain (Band 4.1 family) 358.4 8.2e-112 1 PF00373.8.ls FERM domain (Band 4.1 family) 360.2 3e-105 1 PF05902.3.fs 4.1 protein C-terminal domain (CTD) 185.8 9.8e-54 1 PF05902.3.ls 4.1 protein C-terminal domain (CTD) 187.6 2.8e-53 1 PF04382.3.fs SAB domain 133.7 7.6e-38 1 PF04382.3.ls SAB domain 135.7 1.2e-37 1 PF08736.1.fs FERM adjacent (FA) 84.6 2.5e-23 1 PF08736.1.ls FERM adjacent (FA) 86.6 7.1e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00373.8.fs 1/1 152 341 .. 1 210 [] 358.4 8.2e-112 PF00373.8.ls 1/1 152 341 .. 1 210 [] 360.2 3e-105 PF08736.1.ls 1/1 435 483 .. 1 50 [] 86.6 7.1e-23 PF08736.1.fs 1/1 435 483 .. 1 50 [] 84.6 2.5e-23 PF04382.3.ls 1/1 531 597 .. 1 72 [] 135.7 1.2e-37 PF04382.3.fs 1/1 531 597 .. 1 72 [] 133.7 7.6e-38 PF05902.3.fs 1/1 830 922 .. 1 114 [] 185.8 9.8e-54 PF05902.3.ls 1/1 830 922 .. 1 114 [] 187.6 2.8e-53 Alignments of top-scoring domains: PF00373.8.fs: domain 1 of 1, from 152 to 341: score 358.4, E = 8.2e-112 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd c+vtllD+ +e++veK+ GqvL+d+V++hL+l+EkdYFGL + D KIAA0338 152 CRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCD- 197 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT + +++WLdpsK+i+kQ + +P+++ F vKFYp+D p++L+++iT KIAA0338 198 ---ADSQKNWLDPSKEIKKQ--IRSSPWNFAFTVKFYPPD-PAQLTEDIT 241 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC ry+++LQ++ dI +GrlpC+f t +LL+SYaVQ+e+GDY+ ++H KIAA0338 242 RYYLCLQLRADIITGRLPCSFVTHALLGSYAVQAELGDYDAEEHVGN--- 288 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk Y+s +++P n q + ++Ee+I+elHk +rGm+p eAe +L+ KIAA0338 289 --YVSELRFAP----N--Q--TRELEERIMELHKTYRGMTPGEAEIHFLE 328 iArdLemYGVdff<-* +A++L+mYGVd++ KIAA0338 329 NAKKLSMYGVDLH 341 PF00373.8.ls: domain 1 of 1, from 152 to 341: score 360.2, E = 3e-105 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd c+vtllD+ +e++veK+ GqvL+d+V++hL+l+EkdYFGL + D KIAA0338 152 CRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCD- 197 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT + +++WLdpsK+i+kQ + +P+++ F vKFYp+D p++L+++iT KIAA0338 198 ---ADSQKNWLDPSKEIKKQ--IRSSPWNFAFTVKFYPPD-PAQLTEDIT 241 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC ry+++LQ++ dI +GrlpC+f t +LL+SYaVQ+e+GDY+ ++H KIAA0338 242 RYYLCLQLRADIITGRLPCSFVTHALLGSYAVQAELGDYDAEEHVGN--- 288 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk Y+s +++P n q + ++Ee+I+elHk +rGm+p eAe +L+ KIAA0338 289 --YVSELRFAP----N--Q--TRELEERIMELHKTYRGMTPGEAEIHFLE 328 iArdLemYGVdff<-* +A++L+mYGVd++ KIAA0338 329 NAKKLSMYGVDLH 341 PF08736.1.ls: domain 1 of 1, from 435 to 483: score 86.6, E = 7.1e-23 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p+++F+ +GSkFRYSGRTq+Qt++as+ i+R++p FeRs+Skry++ KIAA0338 435 PPKGFL-VMGSKFRYSGRTQAQTRQASALIDRPAPFFERSSSKRYTM 480 rrs<-* +rs KIAA0338 481 SRS 483 PF08736.1.fs: domain 1 of 1, from 435 to 483: score 84.6, E = 2.5e-23 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p+++F+ +GSkFRYSGRTq+Qt++as+ i+R++p FeRs+Skry++ KIAA0338 435 PPKGFL-VMGSKFRYSGRTQAQTRQASALIDRPAPFFERSSSKRYTM 480 rrs<-* +rs KIAA0338 481 SRS 483 PF04382.3.ls: domain 1 of 1, from 531 to 597: score 135.7, E = 1.2e-37 *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE k+ke+++e+e+++ rh k+e+LDK++D+llKHqASI+ELKRt++E KIAA0338 531 KIKELKPEQETTP-RH---KQEFLDKPEDVLLKHQASINELKRTLKE 573 snStpeprpnEWEREKRLsThSPvr<-* +nS++++r+++WERE+RL++ SP++ KIAA0338 574 PNSKLIHRDRDWERERRLPS-SPAS 597 PF04382.3.fs: domain 1 of 1, from 531 to 597: score 133.7, E = 7.6e-38 *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE k+ke+++e+e+++ rh k+e+LDK++D+llKHqASI+ELKRt++E KIAA0338 531 KIKELKPEQETTP-RH---KQEFLDKPEDVLLKHQASINELKRTLKE 573 snStpeprpnEWEREKRLsThSPvr<-* +nS++++r+++WERE+RL++ SP++ KIAA0338 574 PNSKLIHRDRDWERERRLPS-SPAS 597 PF05902.3.fs: domain 1 of 1, from 830 to 922: score 185.8, E = 9.8e-54 *->keeistksVpivnrevkTiTYesaqvDdgadldpGvLltaqtiTsEt ++ei+++s pi++++v T+TY ++T+Et KIAA0338 830 ATEIRSLS-PIIGKDVLTSTY--------------------GATAET 855 lSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAkeq lSt+TTTh+TKTvkgG+sETriEkri+ItgD+D+D+DqaLa+AIkEAk q KIAA0338 856 LSTSTTTHVTKTVKGGFSETRIEKRIIITGDEDVDQDQALALAIKEAKLQ 905 hPDMsVtKvvVhqeTei<-* hPDM+VtK+vV++eT++ KIAA0338 906 HPDMLVTKAVVYRETDP 922 PF05902.3.ls: domain 1 of 1, from 830 to 922: score 187.6, E = 2.8e-53 *->keeistksVpivnrevkTiTYesaqvDdgadldpGvLltaqtiTsEt ++ei+++s pi++++v T+TY ++T+Et KIAA0338 830 ATEIRSLS-PIIGKDVLTSTY--------------------GATAET 855 lSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAkeq lSt+TTTh+TKTvkgG+sETriEkri+ItgD+D+D+DqaLa+AIkEAk q KIAA0338 856 LSTSTTTHVTKTVKGGFSETRIEKRIIITGDEDVDQDQALALAIKEAKLQ 905 hPDMsVtKvvVhqeTei<-* hPDM+VtK+vV++eT++ KIAA0338 906 HPDMLVTKAVVYRETDP 922 //