hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00074436/chunk_1/iprscan-20080502-00074436.nocrc
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Query sequence: KIAA0336
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01465.10.fs GRIP domain                                     71.0    3.7e-20   1
PF01465.10.ls GRIP domain                                     73.0    9.1e-19   1
PF00170.11.fs bZIP transcription factor                       32.2    1.7e-08  10
PF02370.7.ls M protein repeat                                33.7      6e-07   9
PF02370.7.fs M protein repeat                                23.1    5.4e-05   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01465.10.fs   1/1    1563  1608 ..     1    46 []    71.0  3.7e-20
PF01465.10.ls   1/1    1563  1608 ..     1    46 []    73.0  9.1e-19

Alignments of top-scoring domains:
PF01465.10.fs: domain 1 of 1, from 1563 to 1608: score 71.0, E = 3.7e-20
                   *->eganleYLKNVllqFLeskeseerkqLLpVistlLqFspeEkqkll<
                      ++anleYLKNVllqF+  k   er++LLpVi+t+Lq+speEk kl  
    KIAA0336  1563    SAANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKLA  1608 

                   -*
                     
    KIAA0336     -    -    

PF01465.10.ls: domain 1 of 1, from 1563 to 1608: score 73.0, E = 9.1e-19
                   *->eganleYLKNVllqFLeskeseerkqLLpVistlLqFspeEkqkll<
                      ++anleYLKNVllqF+  k   er++LLpVi+t+Lq+speEk kl  
    KIAA0336  1563    SAANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKLA  1608 

                   -*
                     
    KIAA0336     -    -    

//