hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00060722/chunk_1/iprscan-20080502-00060722.nocrc
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Query sequence: KIAA0335
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 113.6    2.2e-29   7

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/7     120   145 ..     1    23 []     0.1    3e+02
SM00355      2/7     151   173 ..     1    23 []    23.2    0.036
SM00355      3/7     178   202 ..     1    23 []    13.4      9.7
SM00355      4/7     208   230 ..     1    23 []    21.5     0.11
SM00355      5/7     235   257 ..     1    23 []    19.5     0.48
SM00355      6/7     263   286 ..     1    23 []    23.3    0.035
SM00355      7/7    1450  1472 ..     1    23 []    12.6       12

Alignments of top-scoring domains:
SM00355: domain 1 of 7, from 120 to 145: score 0.1, E = 3e+02
                   *->ykCpigCg.ksfssk.aLkrHmr..vH<-*
                      + C + C + +  s+++L++H +   H   
    KIAA0335   120    FSCLK-CRdNTRYSPnDLQKHFQmwHH    145  

SM00355: domain 2 of 7, from 151 to 173: score 23.2, E = 0.036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C++s ++ + +k+H r+H   
    KIAA0335   151    YPCEM-CNFSANDFqVFKQHRRTH    173  

SM00355: domain 3 of 7, from 178 to 202: score 13.4, E = 9.7
                   *->ykCpigCg.ksfssk.aLkrHmr.vH<-*
                       kC+i C+++s  +  +L++H  ++H   
    KIAA0335   178    VKCDI-CNnESVYTLlNLTKHFTsTH    202  

SM00355: domain 4 of 7, from 208 to 230: score 21.5, E = 0.11
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C++s+ + + +++H+ +H   
    KIAA0335   208    FQCEK-CKFSTQDVgTFVQHIHRH    230  

SM00355: domain 5 of 7, from 235 to 257: score 19.5, E = 0.48
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + C+ ++ +k++L++H+ +H   
    KIAA0335   235    YKCGK-CHHVCFTKgELQKHLHIH    257  

SM00355: domain 6 of 7, from 263 to 286: score 23.3, E = 0.035
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C++  +++++L+rH+ + H   
    KIAA0335   263    FTCQY-CSYGATRReHLVRHVItLH    286  

SM00355: domain 7 of 7, from 1450 to 1472: score 12.6, E = 12
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cg++f +++    H ++H   
    KIAA0335  1450    FNCWF-CGRVFDNQdTWAGHGQRH    1472 

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