# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pf04993.fasta.huge -Q ../query/KIAA0333.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0333, 1223 aa vs ./tmplib.23147 library 1986282 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.4453+/-0.00926; mu= -8.2951+/- 0.626 mean_var=354.8020+/-84.922, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.068090 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0244 ( 2044 res) ha04644s1 (2044) 644 78.3 1.3e-14 >>KIAA0244 ( 2044 res) ha04644s1 (2044 aa) initn: 1310 init1: 636 opt: 644 Z-score: 354.0 bits: 78.3 E(): 1.3e-14 Smith-Waterman score: 1068; 37.396% identity (59.265% similar) in 599 aa overlap (628-1215:869-1338) 600 610 620 630 640 650 KIAA03 RNLVPKKSSFANVAAATPAIKKPPSGFKGTIPKRPWLSATPSSGASAARQAGPAPAAATA .:.: .. .. . ... . .. KIAA02 SGEGRNSSDCRDNEIKKWQLAPLRKMGQPVLPRR----SSEEKSEKIPKESTTVTCTGEK 840 850 860 870 880 890 660 670 680 690 700 710 KIAA03 ASKKFPGSAALVGAVRKPVVPSVPMASPAPGRLGAMSAAPSQPNS-QIRQNIRRSLKEIL ::: ::. .: : .: . :: :. :.:.. ::::..:.:::.:: KIAA02 ASK--PGTHEKQEMKKKKVEKGVLNVHPA--------ASASKPSADQIRQSVRHSLKDIL 900 910 920 930 940 720 730 740 750 760 770 KIAA03 WKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFH ::..::. : . :....:.: .::::.:..:. :: .::.::::.:::::::::. ::. KIAA02 MKRLTDSN-LKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFK 950 960 970 980 990 1000 780 790 800 810 820 830 KIAA03 RVLREEISLAKLVRLKPEELVSKELSTWKERPARSVMESRTKLHNESKK---TAPRQEAI .::. :.. .:.:..::::.::::..:..: : ..: : . : .. : ... KIAA02 KVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGE 1010 1020 1030 1040 1050 1060 840 850 860 870 880 KIAA03 PDLEDSPPVSDSE---EQQESA--RAV--PEKSTAPLLDVFSSMLKDTTSQHRAHLFDLN ..:.. :....: : :: : ... :: : .: .:: :::::::: :::::: KIAA02 IEIESDAPMKEQEAAMEIQEPAANKSLEKPEGSEKQKEEV-DSMSKDTTSQHRQHLFDLN 1070 1080 1090 1100 1110 1120 890 900 910 920 930 940 KIAA03 CKICTGQVPSAEDEPAPKKQKLSASVKKEDLKSKHDSSAPDPAPDSADEVMPEAVPEVAS :::: :.. :. .::: :. ..: . ::. :. : . .:. KIAA02 CKICIGRMAPPVDDLSPKKVKVVVGVAR-----KHS--------DNEAESIADAL----- 1130 1140 1150 1160 950 960 970 980 990 1000 KIAA03 EPGLESASHPNVDRTYFPGPPGDGHPEPSPLEDLSPCPASCGSGVVTTVTVSGRDPRTAP KIAA02 ------------------------------------------------------------ 1010 1020 1030 1040 1050 1060 KIAA03 SSSCTAVASAASRPDSTHMVEARQDVPKPVLTSVMVPKSILAKPSSSPDPRYLSVPPSPN ::. . .:: . : .:. :: .. :: :: : :. KIAA02 SSTSNILAS-------EFFEEEKQESPKSTF---------------SPAPR----PEMPG 1170 1180 1190 1070 1080 1090 1100 1110 1120 KIAA03 ISTSESRSPPEGDTTLFLSRLSTIWKGFINMQSVAKFVTKAYPVSGCFDYLSEDLPDTIH :: ::.::. :::::::: :::::::::::::: .::.:::::.:. KIAA02 TVEVEST---------FLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQ 1200 1210 1220 1230 1240 1130 1140 1150 1160 1170 1180 KIAA03 IGGRIAPKTVWDYVGKLKSSVSKELCLIRFHPATEEEEVAYISLYSYFSSRGRFGVVANN .::::.:.:::::: :.:.: .::.:..:: :.:::....: :..::::: :.::.::: KIAA02 VGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANN 1250 1260 1270 1280 1290 1300 1190 1200 1210 1220 KIAA03 NRHVKDLYLIPLSAQDPVPSKLLPFEGPGKRRLSGWR ..:::.:::::.: : .: :.::.::: KIAA02 MKQVKDMYLIPLGATDKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRQHSACASTSHI 1310 1320 1330 1340 1350 1360 1223 residues in 1 query sequences 1986282 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:17:02 2008 done: Thu Dec 18 15:17:03 2008 Total Scan time: 0.750 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]