hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00024205/chunk_1/iprscan-20080502-00024205.nocrc
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Query sequence: KIAA0333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00510                                                 166.7    2.3e-45   1
SM00249                                                  53.9      2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/1     304   354 ..     1    39 []    53.9    2e-11
SM00510    1/1     706   807 ..     1   118 []   166.7  2.3e-45

Alignments of top-scoring domains:
SM00249: domain 1 of 1, from 304 to 354: score 53.9, E = 2e-11
                   *->yCvCgk....g.llqCdkgCdrwyHv.Clgpple......epdg.wy
                      yC+C++++++  +++Cd +C+ w+H +C+g+++ +++  +   ++++
    KIAA0333   304    YCICRQphnnRfMICCD-RCEEWFHGdCVGISEArgrlleRNGEdYI 349  

                   CprCk<-*
                   Cp+C+   
    KIAA0333   350 CPNCT    354  

SM00510: domain 1 of 1, from 706 to 807: score 166.7, E = 2.3e-45
                   *->dkvRdkcqemLlkalqkesdpeeleaagdekkkltaldptelAvqiE
                      +++R++++e+L+k++++++d  +           t+++  ++A++iE
    KIAA0333   706    QNIRRSLKEILWKRVNDSDDLIM-----------TENEVGKIALHIE 741  

                   aelfsvlaqdefgttdkkYknKyRSlyfNLKDkkNpdLRrkVLnGEItpe
                   +e+f+     +f+ td++Yk KyRS++fNLKD+kN++L+++VL++EI+++
    KIAA0333   742 KEMFN-----LFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLA 786  

                   kLvtMtaeELASdeLkelrek<-*
                   kLv++++eEL S+eL +++e+   
    KIAA0333   787 KLVRLKPEELVSKELSTWKER    807  

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