hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00024205/chunk_1/iprscan-20080502-00024205.nocrc
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Query sequence: KIAA0333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07500.4.ls Transcription factor S-II (TFIIS), central d   155.8      1e-43   1
PF07500.4.fs Transcription factor S-II (TFIIS), central d   153.9    3.8e-43   1
PF07744.3.ls SPOC domain                                    151.7    1.9e-42   1
PF07744.3.fs SPOC domain                                    149.8    6.6e-42   1
PF00628.19.fs PHD-finger                                      66.0      9e-21   1
PF00628.19.ls PHD-finger                                      67.9    2.9e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.fs   1/1     304   356 ..     1    51 []    66.0    9e-21
PF00628.19.ls   1/1     304   356 ..     1    51 []    67.9  2.9e-17
PF07500.4.fs   1/1     704   818 ..     1   133 []   153.9  3.8e-43
PF07500.4.ls   1/1     704   818 ..     1   133 []   155.8    1e-43
PF07744.3.fs   1/1    1091  1197 ..     1   131 []   149.8  6.6e-42
PF07744.3.ls   1/1    1091  1197 ..     1   131 []   151.7  1.9e-42

Alignments of top-scoring domains:
PF00628.19.fs: domain 1 of 1, from 304 to 356: score 66.0, E = 9e-21
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                      yC +C++  +++  ++++CD C++wfH++C+g+++ + +++e+++++
    KIAA0333   304    YC-ICRQ--PHNNRFMICCDRCEEWFHGDCVGISEARGRLLErnged 347  

                   WyCpeCkpk<-*
                   ++Cp+C+     
    KIAA0333   348 YICPNCTIL    356  

PF00628.19.ls: domain 1 of 1, from 304 to 356: score 67.9, E = 2.9e-17
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                      yC +C++  +++  ++++CD C++wfH++C+g+++ + +++e+++++
    KIAA0333   304    YC-ICRQ--PHNNRFMICCDRCEEWFHGDCVGISEARGRLLErnged 347  

                   WyCpeCkpk<-*
                   ++Cp+C+     
    KIAA0333   348 YICPNCTIL    356  

PF07500.4.fs: domain 1 of 1, from 704 to 818: score 153.9, E = 3.8e-43
                   *->tgdsvRdKcrelLddaLvkdsdespkgemesvrntldeVtAcdpekl
                      +++++R +++e+L++++++++d +++++              ++ k+
    KIAA0333   704    IRQNIRRSLKEILWKRVNDSDDLIMTEN--------------EVGKI 736  

                   AveIEeelfkClfveagttdkkYKnkyRSiifNLkDkkNpdLrrkVlnGe
                   A +IE+e+f+ lf   + td++YK kyRSi+fNLkD+kN++L+++Vl++e
    KIAA0333   737 ALHIEKEMFN-LF---QVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREE 782  

                   ItPerLatMtpeEmASdeLkkerekitkealrehql<-*
                   I+  +L++ +peE+ S+eL+ ++e+++++  ++  +   
    KIAA0333   783 ISLAKLVRLKPEELVSKELSTWKERPARSVMESRTK    818  

PF07500.4.ls: domain 1 of 1, from 704 to 818: score 155.8, E = 1e-43
                   *->tgdsvRdKcrelLddaLvkdsdespkgemesvrntldeVtAcdpekl
                      +++++R +++e+L++++++++d +++++              ++ k+
    KIAA0333   704    IRQNIRRSLKEILWKRVNDSDDLIMTEN--------------EVGKI 736  

                   AveIEeelfkClfveagttdkkYKnkyRSiifNLkDkkNpdLrrkVlnGe
                   A +IE+e+f+ lf   + td++YK kyRSi+fNLkD+kN++L+++Vl++e
    KIAA0333   737 ALHIEKEMFN-LF---QVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREE 782  

                   ItPerLatMtpeEmASdeLkkerekitkealrehql<-*
                   I+  +L++ +peE+ S+eL+ ++e+++++  ++  +   
    KIAA0333   783 ISLAKLVRLKPEELVSKELSTWKERPARSVMESRTK    818  

PF07744.3.fs: domain 1 of 1, from 1091 to 1197: score 149.8, E = 6.6e-42
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgpqlr
                      WkG+++++sva+f++ka++vsG      + ++l+++LPd     +++
    KIAA0333  1091    WKGFINMQSVAKFVTKAYPVSG------CFDYLSEDLPD-----TIH 1126 

                   itgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvssedtnll
                   i+gR+ +++v++y+ kl++sv+k  e+++++f+P++e       e+++ +
    KIAA0333  1127 IGGRIAPKTVWDYVGKLKSSVSK--ELCLIRFHPATE-------EEEVAY 1167 

                   relvsYLksKqraGvislpergskqngrdlyifP<-*
                    +l+sY++s++r+Gv+++++r    +++dly++P   
    KIAA0333  1168 ISLYSYFSSRGRFGVVANNNR----HVKDLYLIP    1197 

PF07744.3.ls: domain 1 of 1, from 1091 to 1197: score 151.7, E = 1.9e-42
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgpqlr
                      WkG+++++sva+f++ka++vsG      + ++l+++LPd     +++
    KIAA0333  1091    WKGFINMQSVAKFVTKAYPVSG------CFDYLSEDLPD-----TIH 1126 

                   itgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvssedtnll
                   i+gR+ +++v++y+ kl++sv+k  e+++++f+P++e       e+++ +
    KIAA0333  1127 IGGRIAPKTVWDYVGKLKSSVSK--ELCLIRFHPATE-------EEEVAY 1167 

                   relvsYLksKqraGvislpergskqngrdlyifP<-*
                    +l+sY++s++r+Gv+++++r    +++dly++P   
    KIAA0333  1168 ISLYSYFSSRGRFGVVANNNR----HVKDLYLIP    1197 

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