hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00005850/chunk_1/iprscan-20080502-00005850.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0332 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or 61.7 1.6e-16 1 PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or 63.6 5.8e-16 1 PF01805.10.fs Surp module 57.3 9.3e-16 1 PF01805.10.ls Surp module 59.3 1.2e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00076.12.fs 1/1 275 349 .. 1 74 [] 61.7 1.6e-16 PF00076.12.ls 1/1 275 349 .. 1 74 [] 63.6 5.8e-16 PF01805.10.fs 1/1 430 475 .. 1 47 [] 57.3 9.3e-16 PF01805.10.ls 1/1 430 475 .. 1 47 [] 59.3 1.2e-14 Alignments of top-scoring domains: PF00076.12.fs: domain 1 of 1, from 275 to 349: score 61.7, E = 1.6e-16 *->lfVgNLppdtteedLkdlFskfGpiesikivrD.ttretgrskGfaF l+ gN++p ++ee L + F+ fGp s+ki+ +t e r ++++F KIAA0332 275 LYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPrTDEERARERNCGF 321 VeFedeedAekAldalnGkelggrelrv<-* V F + +dAe+Al++lnGk++++ e++ KIAA0332 322 VAFMNRRDAERALKNLNGKMIMSFEMKL 349 PF00076.12.ls: domain 1 of 1, from 275 to 349: score 63.6, E = 5.8e-16 *->lfVgNLppdtteedLkdlFskfGpiesikivrD.ttretgrskGfaF l+ gN++p ++ee L + F+ fGp s+ki+ +t e r ++++F KIAA0332 275 LYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPrTDEERARERNCGF 321 VeFedeedAekAldalnGkelggrelrv<-* V F + +dAe+Al++lnGk++++ e++ KIAA0332 322 VAFMNRRDAERALKNLNGKMIMSFEMKL 349 PF01805.10.fs: domain 1 of 1, from 430 to 475: score 57.3, E = 9.3e-16 *->IkktArfVaknGleFeamlleretkndprFnFLkpsndplhkYYkkk I + +fV++ G+ Feam++ re +n p+F FL++++ p h+YY++k KIAA0332 430 IHRMIEFVVREGPMFEAMIMNREINN-PMFRFLFENQTPAHVYYRWK 475 <-* KIAA0332 - - PF01805.10.ls: domain 1 of 1, from 430 to 475: score 59.3, E = 1.2e-14 *->IkktArfVaknGleFeamlleretkndprFnFLkpsndplhkYYkkk I + +fV++ G+ Feam++ re +n p+F FL++++ p h+YY++k KIAA0332 430 IHRMIEFVVREGPMFEAMIMNREINN-PMFRFLFENQTPAHVYYRWK 475 <-* KIAA0332 - - //