hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23522477/chunk_1/iprscan-20080501-23522477.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0327 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 308.0 1.6e-89 6 PF00028.8.ls Cadherin domain 304.6 1.7e-88 5 PF08266.2.fs Cadherin-like 180.7 1.8e-52 2 PF08266.2.ls Cadherin-like 181.6 1.8e-51 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.fs 1/2 107 190 .. 1 84 [] 179.6 3.8e-52 PF08266.2.ls 1/1 107 190 .. 1 84 [] 181.6 1.8e-51 PF00028.8.ls 1/5 216 311 .. 1 107 [] 63.9 4.7e-16 PF00028.8.fs 2/6 235 311 .. 20 107 .] 62.5 2.7e-17 PF00028.8.ls 2/5 325 416 .. 1 107 [] 76.9 6e-20 PF00028.8.fs 3/6 325 416 .. 1 107 [] 75.1 6.6e-21 PF00028.8.ls 3/5 430 521 .. 1 107 [] 46.5 8.2e-11 PF00028.8.fs 4/6 430 521 .. 1 107 [] 44.7 3.4e-12 PF00028.8.fs 5/6 535 631 .. 1 107 [] 64.4 7.7e-18 PF00028.8.ls 4/5 535 631 .. 1 107 [] 66.2 9.8e-17 PF00028.8.ls 5/5 655 743 .. 1 107 [] 51.1 3.5e-12 PF00028.8.fs 6/6 660 743 .. 9 107 .] 53.1 1.3e-14 Alignments of top-scoring domains: PF08266.2.fs: domain 1 of 2, from 107 to 190: score 179.6, E = 3.8e-52 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gqirYSVpEEt++GsfVGN+ KDLGLd+++La g+RivS+g++q+F KIAA0327 107 GQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLF 153 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +ln+++G+L++++RiDREeLC+qs++C+++ + l+E+ KIAA0327 154 ALNPRSGSLITAGRIDREELCAQSPRCLININTLVED 190 PF08266.2.ls: domain 1 of 1, from 107 to 190: score 181.6, E = 1.8e-51 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gqirYSVpEEt++GsfVGN+ KDLGLd+++La g+RivS+g++q+F KIAA0327 107 GQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLF 153 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +ln+++G+L++++RiDREeLC+qs++C+++ + l+E+ KIAA0327 154 ALNPRSGSLITAGRIDREELCAQSPRCLININTLVED 190 PF00028.8.ls: domain 1 of 5, from 216 to 311: score 63.9, E = 4.7e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ + E a++G + A+D+D g N+ +Y +++++ +F+ KIAA0327 216 LEVKINEIAVPGARYPLPEAVDPD--VGVNSLQSYQLSPNH---HFS 257 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d +tGdn +i++++ + + LDREe ++L++ A+D+ g p KIAA0327 258 LDVQTGDNGAInpeLVLERALDREEE--AAHHLVLTASDG-------GKP 298 plsstatvtitVl<-* p+sst+++++tVl KIAA0327 299 PRSSTVRIHVTVL 311 PF00028.8.fs: domain 2 of 6, from 235 to 311: score 62.5, E = 2.7e-17 *->AtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdnegi...isttk A+D+D g N+ +Y +++++ +F++d +tGdn +i++++ + + KIAA0327 235 AVDPD--VGVNSLQSYQLSPNH---HFSLDVQTGDNGAInpeLVLER 276 pLDREeifngeYeLtveAtDadpllasgggpplsstatvtitVl<-* LDREe ++L++ A+D+ g pp+sst+++++tVl KIAA0327 277 ALDREEE--AAHHLVLTASDG-------GKPPRSSTVRIHVTVL 311 PF00028.8.ls: domain 2 of 5, from 325 to 416: score 76.9, E = 6e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y + v En p+Gt++ltvtA+D+D +g Ng++ Y++ + n+++ KIAA0327 325 YRVKVLENMPPGTRLLTVTASDPD--EGINGKVAYKFRKINEkqTPL 369 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F ++++tG+ is++k+LD+Ee+ + Ye + A D + + KIAA0327 370 FQLNENTGE----ISIAKSLDYEEC--SFYEMEIQAEDVG---------A 404 lsstatvtitVl<-* l +++ + i+V+ KIAA0327 405 LLGRTKLLISVE 416 PF00028.8.fs: domain 3 of 6, from 325 to 416: score 75.1, E = 6.6e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y + v En p+Gt++ltvtA+D+D +g Ng++ Y++ + n+++ KIAA0327 325 YRVKVLENMPPGTRLLTVTASDPD--EGINGKVAYKFRKINEkqTPL 369 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F ++++tG+ is++k+LD+Ee+ + Ye + A D + + KIAA0327 370 FQLNENTGE----ISIAKSLDYEEC--SFYEMEIQAEDVG---------A 404 lsstatvtitVl<-* l +++ + i+V+ KIAA0327 405 LLGRTKLLISVE 416 PF00028.8.ls: domain 3 of 5, from 430 to 521: score 46.5, E = 8.2e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr v En+ +Gt ++ + ++D D +g Ng+++ + p F+ KIAA0327 430 LFSPVLENSLPGTVIAFLSVHDQD--SGKNGQVVCYTRDNLP---FK 471 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ G + + t+k LDRE ++Y++tv+A+D g+ppls KIAA0327 472 LEKSIGNYYR-LVTRKYLDRENV--SIYNITVMASDL-------GTPPLS 511 statvtitVl<-* +++++ +V KIAA0327 512 TETQIALHVA 521 PF00028.8.fs: domain 4 of 6, from 430 to 521: score 44.7, E = 3.4e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr v En+ +Gt ++ + ++D D +g Ng+++ + p F+ KIAA0327 430 LFSPVLENSLPGTVIAFLSVHDQD--SGKNGQVVCYTRDNLP---FK 471 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ G + + t+k LDRE ++Y++tv+A+D g+ppls KIAA0327 472 LEKSIGNYYR-LVTRKYLDRENV--SIYNITVMASDL-------GTPPLS 511 statvtitVl<-* +++++ +V KIAA0327 512 TETQIALHVA 521 PF00028.8.fs: domain 5 of 6, from 535 to 631: score 64.4, E = 7.7e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ysa + En +G ++ ++tA+D+D + N++++Ys +++ ++ + KIAA0327 535 YSAYILENNLRGASIFSLTAHDPD--SQENAQVTYSVTEDTLqgapl 579 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I++dtG+ ++ ++ D+E+i + L v A+D+ g KIAA0327 580 SSYISINSDTGV----LYALQSFDYEQI--RDLQLLVTASDS-------G 616 gpplsstatvtitVl<-* pplss ++ Vl KIAA0327 617 DPPLSSNMSLSLFVL 631 PF00028.8.ls: domain 4 of 5, from 535 to 631: score 66.2, E = 9.8e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ysa + En +G ++ ++tA+D+D + N++++Ys +++ ++ + KIAA0327 535 YSAYILENNLRGASIFSLTAHDPD--SQENAQVTYSVTEDTLqgapl 579 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I++dtG+ ++ ++ D+E+i + L v A+D+ g KIAA0327 580 SSYISINSDTGV----LYALQSFDYEQI--RDLQLLVTASDS-------G 616 gpplsstatvtitVl<-* pplss ++ Vl KIAA0327 617 DPPLSSNMSLSLFVL 631 PF00028.8.ls: domain 5 of 5, from 655 to 743: score 51.1, E = 3.5e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + E G v+ v A+D+D +g+N+ ++Y++l+ +++g F+ KIAA0327 655 LAPRSAER---GYLVTKVVAVDRD--SGQNAWLSYRLLKASEPGLFS 696 IdpdtGdnegiisttkp.LDREeifngeYeLtveAtDadpllasgggppl + +tG+ ++t++ LDR + + +L+v ++D+ g+ppl KIAA0327 697 VGLHTGE----VRTARAlLDRDAL--KQ-SLVVAVQDH-------GQPPL 732 sstatvtitVl<-* s+t+t+t+ V KIAA0327 733 SATVTLTVAVA 743 PF00028.8.fs: domain 6 of 6, from 660 to 743: score 53.1, E = 1.3e-14 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G v+ v A+D+D +g+N+ ++Y++l+ +++g F++ +tG+ KIAA0327 660 AERGYLVTKVVAVDRD--SGQNAWLSYRLLKASEPGLFSVGLHTGE- 703 egiisttkp.LDREeifngeYeLtveAtDadpllasgggpplsstatvti ++t++ LDR + + +L+v ++D+ g+ppls+t+t+t+ KIAA0327 704 ---VRTARAlLDRDAL--KQ-SLVVAVQDH-------GQPPLSATVTLTV 740 tVl<-* V KIAA0327 741 AVA 743 //