hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23411037/chunk_1/iprscan-20080501-23411037.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0322 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00119 640.6 5.1e-188 1 SM00456 95.9 4.7e-24 2 SM00239 59.5 4.3e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 214 325 .. 1 92 [] 59.5 4.3e-13 SM00456 1/2 838 870 .. 1 34 [] 56.8 2.8e-12 SM00456 2/2 1027 1059 .. 1 34 [] 39.1 5.9e-07 SM00119 1/1 1277 1614 .] 1 407 [] 640.6 5.1e-188 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 214 to 325: score 59.5, E = 4.3e-13 *->tLtvkiisArnLp.......DPYVkvs...................k ++ + ++A +L+++ ++DPY k+s ++++++ + +++++ ++ KIAA0322 214 SFSLSDFQAMGLKkgmffnpDPYLKISiqpgkhsifpalphhgqerR 260 TkvvkktlsgfNPvWnEesetFeFevpp.s.LeieVyDk.........df +k++ +t NP+W e +F F p++ LeieV+Dk ++++ ++f KIAA0322 261 SKIIGNTV---NPIWQAE--QFSFVSLPtDvLEIEVKDKfaksrpiikRF 305 iGrvtippnnahqhsadglihlsell.ggrh.kl<-* +G++++p +++ll+++ + KIAA0322 306 LGKLSMP--------------VQRLLeRHAIgDR 325 SM00456: domain 1 of 2, from 838 to 870: score 56.8, E = 2.8e-12 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plPp+We+r+d Gr++Y++h++++t+W++P+ KIAA0322 838 PLPPNWEARIDSH-GRVFYVDHVNRTTTWQRPTA 870 SM00456: domain 2 of 2, from 1027 to 1059: score 39.1, E = 5.9e-07 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* lP gWe +d++ G+ ++++h+++ t++ +Pr KIAA0322 1027 ELPRGWEIKTDQQ-GKSFFVDHNSRATTFIDPRI 1059 SM00119: domain 1 of 1, from 1277 to 1614: score 640.6, E = 5.1e-188 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske ++s ++L++++ L+++f vgEeglD++G++rEFfflls+e KIAA0322 1277 AYSRKELQRNK---LYVTF------VGEEGLDYSGPSREFFFLLSQE 1314 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav lfnp +ygLF+ys+nd+ ++ ++sa+++n+++ KIAA0322 1315 LFNP-YYGLFEYSANDT------------YTVQISPMSAFVENHLE---- 1347 yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP +Frf Gr+lG+Al++++llD++F+rpFyK LL++p ++l+Dle+lD KIAA0322 1348 WFRFSGRILGLALIHQYLLDAFFTRPFYKALLRLP----CDLSDLEYLDE 1393 elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles e+++sL+w+ ++n+it++ ld LtF++++e KIAA0322 1394 EFHQSLQWM-------------------KDNNITDI-LD--LTFTVNEEV 1421 dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG fg+v+++ELk GG+n++VTe+NkkEY+++++ +r ++gv +q+eA+++G KIAA0322 1422 -FGQVTERELKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALVRG 1470 FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq F+eV++ +l + +Fd++ELeL i+G++ eid++d+++nTeyrggY++++ KIAA0322 1471 FYEVVDSRLVS-VFDARELELVIAGTA-EIDLNDWRNNTEYRGGYHDGHL 1518 tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq +i +wFW +ve+F+ne+r +LLqFVTG+s++P ++GFaaL++sNG++ KIAA0322 1519 VI---RWFWAAVERFNNEQRLRLLQFVTGTSSVP--YEGFAALRGSNGLR 1563 kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg +F+I+k+g + ++LP+AhTCfNrL+LPpY S+++L+eKLL+A++e KIAA0322 1564 RFCIEKWG-----KITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEE- 1607 RiggeGFgls<-* + Fgl+ KIAA0322 1608 ---TSTFGLE 1614 //