hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23411037/chunk_1/iprscan-20080501-23411037.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0322 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 600.9 1.1e-177 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 599.0 4.1e-177 1 PF00397.16.ls WW domain 100.5 4.6e-27 2 PF00397.16.fs WW domain 96.5 4.7e-26 2 PF00168.20.fs C2 domain 45.3 6.3e-13 1 PF00168.20.ls C2 domain 47.3 4.9e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/1 215 310 .. 1 88 [] 45.3 6.3e-13 PF00168.20.ls 1/1 215 310 .. 1 88 [] 47.3 4.9e-11 PF00397.16.ls 1/2 839 868 .. 1 30 [] 58.8 1.6e-14 PF00397.16.fs 1/2 839 868 .. 1 30 [] 56.8 6.1e-15 PF00397.16.fs 2/2 1028 1057 .. 1 30 [] 39.7 3.9e-10 PF00397.16.ls 2/2 1028 1057 .. 1 30 [] 41.7 2.4e-09 PF00632.15.fs 1/1 1309 1614 .] 1 351 [] 599.0 4.1e-177 PF00632.15.ls 1/1 1309 1614 .] 1 351 [] 600.9 1.1e-177 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 1, from 215 to 310: score 45.3, E = 6.3e-13 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk.......... ++ ++A +L++ ++ +DPY k+++ + k + + ++++++ KIAA0322 215 FSLSDFQAMGLKK-G-MFFNPDPYLKISIQPGKH-SIfpalphhgqe 258 kkTkvikktlNPvWN.EtFtFevpppdlqetLeieVyDydrfgr...ddf +++k+i +t NP+W E+F F + ++ LeieV+D+ ++r+ f KIAA0322 259 RRSKIIGNTVNPIWQaEQFSFV--SLPTDV-LEIEVKDKFAKSRpiiKRF 305 lGevs<-* lG+ s KIAA0322 306 LGKLS 310 PF00168.20.ls: domain 1 of 1, from 215 to 310: score 47.3, E = 4.9e-11 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk.......... ++ ++A +L++ ++ +DPY k+++ + k + + ++++++ KIAA0322 215 FSLSDFQAMGLKK-G-MFFNPDPYLKISIQPGKH-SIfpalphhgqe 258 kkTkvikktlNPvWN.EtFtFevpppdlqetLeieVyDydrfgr...ddf +++k+i +t NP+W E+F F + ++ LeieV+D+ ++r+ f KIAA0322 259 RRSKIIGNTVNPIWQaEQFSFV--SLPTDV-LEIEVKDKFAKSRpiiKRF 305 lGevs<-* lG+ s KIAA0322 306 LGKLS 310 PF00397.16.ls: domain 1 of 2, from 839 to 868: score 58.8, E = 1.6e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lpp+We+r+d++Gr++Y++h+++tT+W++P KIAA0322 839 LPPNWEARIDSHGRVFYVDHVNRTTTWQRP 868 PF00397.16.fs: domain 1 of 2, from 839 to 868: score 56.8, E = 6.1e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lpp+We+r+d++Gr++Y++h+++tT+W++P KIAA0322 839 LPPNWEARIDSHGRVFYVDHVNRTTTWQRP 868 PF00397.16.fs: domain 2 of 2, from 1028 to 1057: score 39.7, E = 3.9e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe td++G+ ++++hn++ T++++P KIAA0322 1028 LPRGWEIKTDQQGKSFFVDHNSRATTFIDP 1057 PF00397.16.ls: domain 2 of 2, from 1028 to 1057: score 41.7, E = 2.4e-09 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe td++G+ ++++hn++ T++++P KIAA0322 1028 LPRGWEIKTDQQGKSFFVDHNSRATTFIDP 1057 PF00632.15.fs: domain 1 of 1, from 1309 to 1614: score 599.0, E = 4.1e-177 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Lls+elfnP+ygLFeys a+d+yt+qi+P s ++ KIAA0322 1309 FLLSQELFNPYYGLFEYS----------ANDTYTVQISPMSAF-VEN 1344 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl++F+F GrilGlAl ++ lld++F+r+FYK LL ++p++l+Dle +D KIAA0322 1345 HLEWFRFSGRILGLALIHQYLLDAFFTRPFYKALL--RLPCDLSDLEYLD 1392 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas e+++SL+w+++n+++ ++L+LtF+v+ee+ f KIAA0322 1393 EEFHQSLQWMKDNNIT------------DILDLTFTVNEEV---F----- 1422 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+++++e Lk +G+n+ VT++NkkeY+e++v +r+++g+ +Q+eA+ + KIAA0322 1423 --GQVTERE-LKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALVR 1469 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF+ev++srl+s+Fd++ELel+i G+ e iD++d+++nTeY+ggY++ + KIAA0322 1470 GFYEVVDSRLVSVFDARELELVIAGTAE-IDLNDWRNNTEYRGGYHDGHL 1518 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +I+wFW +ve f++e+r +LLqFvTG+s+vP +GF+aL+ GsnG+++ KIAA0322 1519 --VIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALR--GSNGLRR 1564 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG F+Iek+ g+ ++LP+AHTCFNrLdLPpY+S+ L+ekLl+A+ eet KIAA0322 1565 FCIEKW---GKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAV-EETST 1610 Fgle<-* Fgle KIAA0322 1611 FGLE 1614 PF00632.15.ls: domain 1 of 1, from 1309 to 1614: score 600.9, E = 1.1e-177 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Lls+elfnP+ygLFeys a+d+yt+qi+P s ++ KIAA0322 1309 FLLSQELFNPYYGLFEYS----------ANDTYTVQISPMSAF-VEN 1344 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl++F+F GrilGlAl ++ lld++F+r+FYK LL ++p++l+Dle +D KIAA0322 1345 HLEWFRFSGRILGLALIHQYLLDAFFTRPFYKALL--RLPCDLSDLEYLD 1392 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas e+++SL+w+++n+++ ++L+LtF+v+ee+ f KIAA0322 1393 EEFHQSLQWMKDNNIT------------DILDLTFTVNEEV---F----- 1422 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+++++e Lk +G+n+ VT++NkkeY+e++v +r+++g+ +Q+eA+ + KIAA0322 1423 --GQVTERE-LKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALVR 1469 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF+ev++srl+s+Fd++ELel+i G+ e iD++d+++nTeY+ggY++ + KIAA0322 1470 GFYEVVDSRLVSVFDARELELVIAGTAE-IDLNDWRNNTEYRGGYHDGHL 1518 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +I+wFW +ve f++e+r +LLqFvTG+s+vP +GF+aL+ GsnG+++ KIAA0322 1519 --VIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALR--GSNGLRR 1564 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG F+Iek+ g+ ++LP+AHTCFNrLdLPpY+S+ L+ekLl+A+ eet KIAA0322 1565 FCIEKW---GKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAV-EETST 1610 Fgle<-* Fgle KIAA0322 1611 FGLE 1614 //