hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23361350/chunk_1/iprscan-20080501-23361350.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0319 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00089 252.1 4.5e-71 5 SM00765 122.1 6e-32 1 SM00060 28.8 0.00077 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00765 1/1 57 139 .. 1 116 [] 122.1 6e-32 SM00060 1/4 342 455 .. 1 69 [] 5.5 50 SM00089 1/5 378 464 .. 1 91 [] 5.4 4.5 SM00060 2/4 471 549 .. 1 69 [] 6.3 40 SM00089 2/5 472 561 .. 1 91 [] 63.3 3.1e-14 SM00089 3/5 567 657 .. 1 91 [] 63.2 3.2e-14 SM00060 3/4 630 739 .. 1 69 [] 10.8 12 SM00089 4/5 658 751 .. 1 91 [] 62.1 7.2e-14 SM00060 4/4 756 836 .. 1 69 [] 6.2 40 SM00089 5/5 757 848 .. 1 91 [] 58.1 1.1e-12 Alignments of top-scoring domains: SM00765: domain 1 of 1, from 57 to 139: score 122.1, E = 6e-32 *->spgedClgrGaffrvlenagiirteeSisaGarfLksPvavntwedE +++++C+++ r+++na +i++++++++++r+ +++++++d KIAA0319 57 CARKQCSEG----RTYSNA-VISPNLETTRIMRV----SHTFPVVD- 93 AYLWNCvraCCstpnisGdkaCnlavfeedlrredaegnCYLfnCtypgk C++aCC++++ C+la+++ eg+CYL++C p+k KIAA0319 94 -----CTAACCDLSS------CDLAWWF--------EGRCYLVSC--PHK 122 evClP.kfkVRmpkegytsy<-* e+C+P+k+ p+++y ++ KIAA0319 123 ENCEPkKMG---PIRSYLTF 139 SM00060: domain 1 of 4, from 342 to 455: score 5.5, E = 50 *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP............. P pP+ ++ t++ + +s +++P ++ + +++ KIAA0319 342 PTPPTS---AAPSESTPS------ELPISPTtAPrtvkeltvsagdn 379 ........ivgYr..................................... ++++v+ + + + ++++++ + +++ + +++ +++ +++ +++ KIAA0319 380 liitlpdnEVELKafvapappvettynyewnlishptdyqgeikqghkqt 429 ytltgLkPgaepwteYefrVrAvngndaGeg<-* l+ L+ g Y+f+V++ ++n+ Geg KIAA0319 430 LNLSQLSVG-----LYVFKVTVSSENAFGEG 455 SM00089: domain 1 of 5, from 378 to 464: score 5.4, E = 4.5 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGs. ++ + p++ v e F a++ + + + y+W+++ + KIAA0319 378 DNLIITLPDNEV------ELKAFVAPA--PPVETTYNYEWNLISHPt 416 .....atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp + ++++ + +t +++ +++G Y +++tv+ ++ + ++v+V++ KIAA0319 417 dyqgeIKQGHKQTLNLSQLSVGLYVFKVTVSSEN--AFGEGFVNVTVKPA 464 <-* KIAA0319 - - SM00060: domain 2 of 4, from 471 to 549: score 6.3, E = 40 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr.... P ++ +++ + t lts+ + + ++ +iv+Y++++ KIAA0319 471 PVAVVS---PQLQELTLP----LTSALIDGSQStddteIVSYHweei 510 ...............ytltgLkPgaepwteYefrVrAvngndaGeg<-* +++ ++++++++++ +l++L Pg +Y+fr+++ ++ +G KIAA0319 511 ngpfieektsvdspvLRLSNLDPG-----NYSFRLTVTDS--DGAT 549 SM00089: domain 2 of 5, from 472 to 561: score 63.3, E = 3.1e-14 *->vadftasptvgvksiAagesVtFtass.StdedGsivsytWdFGDGs va+++++ ++++ ++++ + + s+Std++ ivsy+W ++G KIAA0319 472 VAVVSPQLQELT----LPLTSALIDGSqSTDDTE-IVSYHWEEINGP 513 ....atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp< +++ts +p ++ + pG+Y+++Ltvt+++G +++s+t+ ++V KIAA0319 514 fieeKTSVDSPVLRLSNLDPGNYSFRLTVTDSDG-ATNSTTAALIVNNA 561 -* KIAA0319 - - SM00089: domain 3 of 5, from 567 to 657: score 63.2, E = 3.2e-14 *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa va++ +++t ++ ++ s+t+++ + +++d+ iv y+W++G G KIAA0319 567 VANAGPNHTITL----PQNSITLNGNQ-SSDDHQIVLYEWSLGPG-- 606 tsstgptvtHtYtkp..........GtYtVtLtvtnavGnssssatktvv s+g++v++ +++ + + ++G+Yt++L+vt++ ++ s+a++tv+ KIAA0319 607 --SEGKHVVMQGVQTpylhlsamqeGDYTFQLKVTDSS-RQQSTAVVTVI 653 Vvvp<-* V+++ KIAA0319 654 VQPE 657 SM00060: domain 3 of 4, from 630 to 739: score 10.8, E = 12 *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP............. + l+vtd ++ + +++++ P+++ ++ +++ KIAA0319 630 GDYTFQ---LKVTDSSRQQS----TAVVTVIvQPennrppvavagpd 669 ......................ivgYr...................ytlt ++ + ++ ++++++++++iv Y+++ +++++ ++ ++ ++ +t+t KIAA0319 670 kelifpvesatldgssssddhgIVFYHwehvrgpsavemenidkaiATVT 719 gLkPgaepwteYefrVrAvngndaGeg<-* gL+ g +Y+fr+++++ +G + KIAA0319 720 GLQVG-----TYHFRLTVKDQ--QGLS 739 SM00089: domain 4 of 5, from 658 to 751: score 62.1, E = 7.2e-14 *->vadftasptvgvks.iAagesVtFtassStdedGsivsytW..dFGD + + +++ ++ k+ i++ es+t+++ssS+d+ G iv y+W++ G KIAA0319 658 NNRPPVAVAGPDKElIFPVESATLDGSSSSDDHG-IVFYHWehVRGP 703 Gs..atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp< +++ + + +t+t +++GtY+++Ltv++ +G +ss+ t tv V+ + KIAA0319 704 SAveMENIDKAIATVTGLQVGTYHFRLTVKDQQG-LSSTSTLTVAVKKE 751 -* KIAA0319 - - SM00060: domain 4 of 4, from 756 to 836: score 6.2, E = 40 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr.... P + ++ +v ++ s+tl ++ ++ iv+Y + ++ KIAA0319 756 PRARAGG--RHVLVLPNN------SITLDGSRStddqrIVSYLwird 794 ..................ytltgLkPgaepwteYefrVrAvngndaGeg< ++++ +++ ++++ ++ lt+L++g Y+f +r+ ++ +G + KIAA0319 795 gqspaagdvidgsdhsvaLQLTNLVEG-----VYTFHLRVTDS--QGAS 836 -* KIAA0319 - - SM00089: domain 5 of 5, from 757 to 848: score 58.1, E = 1.1e-12 *->vadftasptvgvksiAagesVtFtassStdedGsivsytW....... +a++ + ++ ++ s+t+++s Std+ ivsy+W ++++++ KIAA0319 757 RARAGGRHVLVL----PNNSITLDGSRSTDDQR-IVSYLWirdgqsp 798 ...dFGDGsatsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvv +d++DG s ++ +t + +G Yt++L+vt+++G +s+++t+tv+ KIAA0319 799 aagDVIDG---SDHSVALQLTNLVEGVYTFHLRVTDSQG-ASDTDTATVE 844 Vvvp<-* V++ KIAA0319 845 VQPD 848 //