hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23312270/chunk_1/iprscan-20080501-23312270.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0316
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00295                                                 181.3    9.3e-50   1
SM00228                                                  60.8    1.7e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1     142   212 ..     1    80 []    60.8  1.7e-13
SM00295    1/1     259   481 ..     1   232 []   181.3  9.3e-50

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 142 to 212: score 60.8, E = 1.7e-13
                   *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN
                      + lGf  v +++++++v sv pG+p +         L +GD+I+ +N
    KIAA0316   142    PVLGFGFVAgsekPVVVRSVTPGGPSEGK-------LIPGDQIVMIN 181  

                   GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   + ++v++++ e+++dl +++++     ++ Ltv+ +    
    KIAA0316   182 D-EPVSTAPRERVIDLVRSCKE-----SILLTVIQPY    212  

SM00295: domain 1 of 1, from 259 to 481: score 181.3, E = 9.3e-50
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                        +p+vlkVyl +g+t++f++d+st++++++ t+ +kl++  +  e+
    KIAA0316   259    --MPNVLKVYLENGQTKSFRFDCSTSIKDVILTLQEKLSI--KGIEH 301  

                   FgLqfedkded...shWldpaktilkqdvkspksepltlyFRvkFyppdw
                   F+L++e+++e+ +++  l ++++ l q++++p+s+ ++++FR+ F p+d+
    KIAA0316   302 FSLMLEQRTEGagtKLLLLHEQETLTQVTQRPSSHKMRCLFRISFVPKDP 351  

                   hgppeqlkeDptrynllylQvrddilsGrlpcp.seeeallLAaLalqae
                        +l++Dp+++++ly+Q ++d++++r+  + +++ al+LAaL++++ 
    KIAA0316   352 ---IDLLRRDPVAFEYLYVQSCNDVVQERFGPElKYDIALRLAALQMYIA 398  

                   fGdydpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkew
                   +   +++++   +slk+++ke++l++flP  +l+s     +++++++k +
    KIAA0316   399 TVTTKQTQK---ISLKYIEKEWGLETFLPSAVLQS-----MKEKNIKKAL 440  

                   rerIvelhkeh...aglspeeaklkYLelarrLpptYGvelF<-*
                      + ++ + ++++++ls  +ak++YL+ +++L  +YG ++F   
    KIAA0316   441 SHLVKANQNLVppgKKLSALQAKVHYLKFLSDLR-LYGGRVF    481  

//