hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23312270/chunk_1/iprscan-20080501-23312270.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0316 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 42.2 3.3e-11 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 41.3 3.1e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/1 137 209 .. 1 86 [] 41.3 3.1e-09 PF00595.14.fs 1/1 144 209 .. 13 86 .] 42.2 3.3e-11 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 1, from 137 to 209: score 41.3, E = 3.1e-09 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL e++ + lGf + gs+k +++v +v pG g+ e + L KIAA0316 137 EMRRDPV-----LGFGFVAGSEK----PVVVRSVTPG-GPSEGK--L 171 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +GDqI+ +N+++++ + e+++++ +++++ ++ Ltv+ KIAA0316 172 IPGDQIVMINDEPVSTAPRERVIDLVRSCKE-SILLTVI 209 PF00595.14.fs: domain 1 of 1, from 144 to 209: score 42.2, E = 3.3e-11 *->lGfsikggsdkgadkgifvsevlpGsgaAeagGrLqaGDqIlsvNGq lGf + gs+k +++v +v pG g+ e + L +GDqI+ +N++ KIAA0316 144 LGFGFVAGSEK----PVVVRSVTPG-GPSEGK--LIPGDQIVMINDE 183 dlenlsheeavlalkgsggsevtLtvl<-* +++ + e+++++ +++++ ++ Ltv+ KIAA0316 184 PVSTAPRERVIDLVRSCKE-SILLTVI 209 //