hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23293457/chunk_1/iprscan-20080501-23293457.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0315 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00630 385.5 3.1e-111 1 SM00429 209.8 2.4e-58 3 SM00423 122.1 6.1e-32 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00630 1/1 37 453 .. 1 532 [] 385.5 3.1e-111 SM00423 1/3 471 522 .. 1 56 [] 53.8 2.2e-11 SM00423 2/3 617 670 .. 1 56 [] 32.5 5.9e-05 SM00423 3/3 762 804 .. 1 56 [] 35.8 5.7e-06 SM00429 1/3 805 896 .. 1 111 [] 86.3 3.6e-21 SM00429 2/3 897 983 .. 1 111 [] 74.7 1.2e-17 SM00429 3/3 985 1095 .. 1 111 [] 48.8 7e-10 Alignments of top-scoring domains: SM00630: domain 1 of 1, from 37 to 453: score 385.5, E = 3.1e-111 *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps +nhl++de+sg +y+GA+N++y+L+ + l+l+++v+tgp+ld+++ KIAA0315 37 LNHLAVDEASG--VVYLGAVNALYQLD-AKLQLEQQVATGPALDNKK 80 ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv c++ + a++++ + ++ +dN++++Ll+d++ +++L+ KIAA0315 81 CTP--------PIEASQCH----E-AEMTDNVNQLLLLDPP---RKRLVE 114 CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg CG++ g+ C+l+ l++ + l ++ +s+e ++++s++ KIAA0315 115 CGSLFKGI---CALRALSN---------ISLRLFYEDGSGEKSFVASNDE 152 kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs ++ + l+sst+ +d+ L++g+ + + ++ ++ R KIAA0315 153 GVATVGLVSSTGPGGDR------VLFVGKGNGPH------DNGIIVSTRL 190 lgtt.qdgfefefhslrttiydskwgydlnepnFVyaFeipesgdgdfVY l+ t+++++ ++ + t + +++ +n +FV+aFe+ g +V+ KIAA0315 191 LDRTdSREAFEAYTDHATYKAGYLS---TNTQQFVAAFED-----GPYVF 232 FFFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSFLKar F+F++++ + ++ ++ +AR+C++D ++++S+L++ KIAA0315 233 FVFNQQDKHPAR--------NRTLLARMCRED--------PNYYSYLEMD 266 LnCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqgq L+C++p+ + F+ + a++++ p +++ vlY+VFs + KIAA0315 267 LQCRDPDIHAAA---FGTCLAASVAAP----GSGR-----VLYAVFS--R 302 qtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpvegnk ++ s ++ pg +C F+l++++a++++++++cy+g ++ + KIAA0315 303 DSRS----SGGPGAGLCLFPLDKVHAKMEANRNACYTG---TREARDIFY 345 vPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPltgr P++ +C ++ + + + +++ ++ p++++++ l+g+ KIAA0315 346 KPFHGDIQC----------GGHAPGSSKSFPCGSEHLPYPLGSRDGLRGT 385 PllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvvvsrs ++l++ + +lT+++V +++ +tV+FlGTsdGr+lKv+++++ KIAA0315 386 AVLQRG--GLNLTAVTVAAENN-------HTVAFLGTSDGRILKVYLTPD 426 ssssssaglesvlleelqvfppgsepirdmvlsskk<-* + s +++++ v ++ ++ rd+vls++ KIAA0315 427 GT--------SSEYDSILVEINK-RVKRDLVLSGDL 453 SM00423: domain 1 of 3, from 471 to 522: score 53.8, E = 2.2e-11 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrg.srqn +C y ++C++C ++dpy CgWC+ egrCtr+++C+++++ s++ KIAA0315 471 ECLSY--PTCTQCRDSQDPY-CGWCVVEGRCTRKAECPRAEEaSHWL 514 wssgpssqCp<-* ws+ s++C KIAA0315 515 WSR--SKSCV 522 SM00423: domain 2 of 3, from 617 to 670: score 32.5, E = 5.9e-05 *->rCsqygv....tsCseCllardpygCgWCssegrCtrgerCderrgs +C+q+++ +++ C +C+++r+ C+W+ + + C +++ +e+ + KIAA0315 617 DCRQAMSleenLPCISCVSNRWT--CQWDLRYHECREASPNPEDGIV 661 rqnwssgpssqCp<-* r+++++ +Cp KIAA0315 662 RAHMED----SCP 670 SM00423: domain 3 of 3, from 762 to 804: score 35.8, E = 5.7e-06 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw +Cs ++ ++Cs C +a ++y+C+WC +++rC+ ++ C+ KIAA0315 762 NCSFGR-SDCSLCRAANPDYRCAWCGGQSRCVYEALCN--------T 799 ssgpssqCp<-* +s +Cp KIAA0315 800 TS----ECP 804 SM00429: domain 1 of 3, from 805 to 896: score 86.3, E = 3.6e-21 *->dPvItrisPssGplsGGteritlcGknLds.dgsvvfvrvgvgGrvW +PvItri+P++Gpl GG rit+ G+nL+++ g+ ++++v KIAA0315 805 PPVITRIQPETGPLGGGI-RITILGSNLGVqAGDIQRISVA------ 844 evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdng +++C+f+p+ ++ st ivC++ ++ +p ++ v ev + ++ KIAA0315 845 GRNCSFQPERYS---VSTRIVCVIEAAE----TPFTGGV----EVDVFGK 883 gvrtelsppspFtYv<-* +r+ +p+ +Ft+ KIAA0315 884 LGRS--PPNVQFTFQ 896 SM00429: domain 2 of 3, from 897 to 983: score 74.7, E = 1.2e-17 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe P+ ++++P +Gp +GGt ++t++G++Ld+ gs++ vrv+++ + KIAA0315 897 QPKPLSVEPQQGPQAGGT-TLTIHGTHLDT-GSQEDVRVTLN----G 937 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg vpC+++ + ++ C+t+p++ + g+ + ev+ ++++ KIAA0315 938 VPCKVTK-------FGAQLQCVTGPQA----TRGQMLL----EVSYGGSP 972 vrtelsppspFtYv<-* v+ p FtY+ KIAA0315 973 VPN---PGIFFTYR 983 SM00429: domain 3 of 3, from 985 to 1095: score 48.8, E = 7e-10 *->dPvItrisPssGplsGGteritlcGknLds..............dgs +Pv +++P ++++sGG+ i ++G+ + ++ ++ ++++ KIAA0315 985 NPVLRAFEPLRSFASGGR-SINVTGQGFSLiqrfamvviaeplqSWQ 1030 vvfvrvgvgGrvWevpCtflpsdvhGkdsstaivCrtPpylnqspgpgsv +++ + +p+t++ +d+ ++++t+ v+ +P+ ++ p + KIAA0315 1031 PPREAESL------QPMTVVGTDYV-FHNDTKVVFLSPAVPE---EPEAY 1070 pvrvtgevgfdnggvrtel.sppspFtYv<-* ++ +v + ++g r++l+++ F+Yv KIAA0315 1071 NL----TVLIEMDGHRALLrTEAGAFEYV 1095 //