hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23293457/chunk_1/iprscan-20080501-23293457.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0315 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08337.2.ls Plexin cytoplasmic region 1295.9 0 1 PF08337.2.fs Plexin cytoplasmic region 1294.2 0 1 PF01833.14.ls IPT/TIG domain 208.2 1.8e-59 3 PF01833.14.fs IPT/TIG domain 202.8 7.4e-58 3 PF01437.15.fs Plexin repeat 100.7 2.3e-32 3 PF01437.15.ls Plexin repeat 99.9 6.8e-27 3 PF01403.10.fs Sema domain 52.1 2.1e-14 2 PF01403.10.ls Sema domain -10.3 4.1e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.ls 1/1 37 452 .. 1 490 [] -10.3 4.1e-10 PF01403.10.fs 1/2 37 130 .. 1 99 [. 27.8 1.1e-07 PF01403.10.fs 2/2 389 452 .. 413 490 .] 24.3 1.1e-06 PF01437.15.fs 1/3 471 522 .. 1 63 [] 60.1 4.6e-19 PF01437.15.ls 1/3 471 522 .. 1 63 [] 61.8 2e-15 PF01437.15.fs 3/3 762 804 .. 1 63 [] 34.5 1.1e-10 PF01437.15.ls 3/3 762 804 .. 1 63 [] 36.1 1.1e-07 PF01833.14.ls 1/3 806 895 .. 1 104 [] 81.5 2.4e-21 PF01833.14.fs 1/3 806 895 .. 1 104 [] 79.7 2.3e-22 PF01833.14.fs 2/3 898 981 .. 1 104 [] 74.0 1e-20 PF01833.14.ls 2/3 898 981 .. 1 104 [] 75.8 1.3e-19 PF01833.14.fs 3/3 986 1094 .. 1 104 [] 49.1 1.6e-13 PF01833.14.ls 3/3 986 1094 .. 1 104 [] 50.9 3.9e-12 PF08337.2.fs 1/1 1273 1808 .. 1 586 [] 1294.2 0 PF08337.2.ls 1/1 1273 1808 .. 1 586 [] 1295.9 0 Alignments of top-scoring domains: PF01403.10.ls: domain 1 of 1, from 37 to 452: score -10.3, E = 4.1e-10 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +++l +de++g +y GA N++y L+ + l++ +q ++g++ + KIAA0315 37 LNHLAVDEASGVVYLGAVNALYQLD-AKLQLEQQVATGPALD----- 77 ceeCkmkGkspgc...VeteCqNfirVLqpyndthLyvCGTnaFqPvCtl +++C+++ + c++ t+++N ++L+p+ +L+ CG+ ++ C l KIAA0315 78 NKKCTPPIEASQCheaEMTDNVNQLLLLDPPRK-RLVECGSLF-KGICAL 125 inlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvq... + l++ + LF + ++++++ ++ d ++++++ ++++ KIAA0315 126 RALSN--------ISLRLFYE--DGSGEKSFVASNDEGVATVGLVSStgp 165 grtgeLYsGtvaDssvaasFsGrd...paIrRslg............shd g++ L++G + ++d++ ++ R+l ++++++ + ++h+ KIAA0315 166 GGDRVLFVGKGNG--------PHDngiIVSTRLLDrtdsreafeaytDHA 207 plrTeqhdskwlnePnFVdsypipyvhsfdDdkVYFFF.rEtaveyspnc ++ ++ + +n +FV+++ + +V+F F+++ ++++ n KIAA0315 208 TYKAGYLS---TNTQQFVAAFEDG-------PYVFFVFnQQDKHPAR-N- 245 gkaiysRVaRvCknDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyF ++ +aR+C D+ +yle++ L C++p+ KIAA0315 246 -RTL---LARMCREDPNYYSYLEMD---------LQCRDPDIHAAA--FG 280 NeLQavfllptganlAreLgIserdpviYGVFttssnsiagpgdnSAVCa L a +p + v+Y+VF+ s s++gpg +C KIAA0315 281 TCLAASVAAPGSGR------------VLYAVFSRDSRSSGGPGAG--LCL 316 FsmsdIrqvFenGpfkhqssEgpnskwlpyrglkvPyPRPGqCpndssgp F++ + + e ++++ +g++ + + + P + qC + g KIAA0315 317 FPLDKVHAKMEANRNACY--TGTREARDIFYK---PFHGDIQCGGHAPG- 360 nytStkdlPDdtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVd S+k +P + ++ p++ + l + ++ + + +lT+++V KIAA0315 361 ---SSKSFP----CGSEHLPYPLGSRDGLRGTAVLQRGGL--NLTAVTVA 401 krVragdGqlYtVlFlGTddGtvlKkvvvlsrsss.syeevvleelqvfk a++ ++tV+FlGT+dG++l v+l +++ +s e ++ ++ KIAA0315 402 ----AEN--NHTVAFLGTSDGRIL--KVYLTPDGTsS-E----YDSILVE 438 dpriePvqnleisskq<-* + v++++ +s++ KIAA0315 439 IN--KRVKRDLVLSGD 452 PF01403.10.fs: domain 1 of 2, from 37 to 130: score 27.8, E = 1.1e-07 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +++l +de++g +y GA N++y L+ + l++ +q ++g++ + KIAA0315 37 LNHLAVDEASGVVYLGAVNALYQLD-AKLQLEQQVATGPALD----- 77 ceeCkmkGkspgc...VeteCqNfirVLqpyndthLyvCGTnaFqPvCtl +++C+++ + c++ t+++N ++L+p+ +L+ CG+ ++ C l KIAA0315 78 NKKCTPPIEASQCheaEMTDNVNQLLLLDPPRK-RLVECGSLF-KGICAL 125 inlgd<-* + l++ KIAA0315 126 RALSN 130 PF01403.10.fs: domain 2 of 2, from 389 to 452: score 24.3, E = 1.1e-06 *->tsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGtvlKkvvvlsrss ++++ +lT+++V a++ ++tV+FlGT+dG++l v+l +++ KIAA0315 389 QRGGLNLTAVTVA----AEN--NHTVAFLGTSDGRIL--KVYLTPDG 427 s.syeevvleelqvfkdpriePvqnleisskq<-* +s e ++ ++ + v++++ +s++ KIAA0315 428 TsS-E----YDSILVEIN--KRVKRDLVLSGD 452 PF01437.15.fs: domain 1 of 3, from 471 to 522: score 60.1, E = 4.6e-19 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. C y++C++C ++dp yCgWC+ egrCtr++ eCpr+e+ KIAA0315 471 ECLSYPTCTQCRDSQDP-YCGWCVVEGRCTRKA-------ECPRAEe 509 pendqwldwsws.sskCp<-* ++ +w+ws+s+ C+ KIAA0315 510 AS-----HWLWSrSKSCV 522 PF01437.15.ls: domain 1 of 3, from 471 to 522: score 61.8, E = 2e-15 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. C y++C++C ++dp yCgWC+ egrCtr++ eCpr+e+ KIAA0315 471 ECLSYPTCTQCRDSQDP-YCGWCVVEGRCTRKA-------ECPRAEe 509 pendqwldwsws.sskCp<-* ++ +w+ws+s+ C+ KIAA0315 510 AS-----HWLWSrSKSCV 522 PF01437.15.fs: domain 3 of 3, from 762 to 804: score 34.5, E = 1.1e-10 *->nCsqy.tsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse nCs +++Cs C aa++ ++C+WC++++rC++++ +C+ + KIAA0315 762 NCSFGrSDCSLCRAANPDYRCAWCGGQSRCVYEA-------LCNTTS 801 pendqwldwswssskCp<-* Cp KIAA0315 802 --------------ECP 804 PF01437.15.ls: domain 3 of 3, from 762 to 804: score 36.1, E = 1.1e-07 *->nCsqy.tsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse nCs +++Cs C aa++ ++C+WC++++rC++++ +C+ + KIAA0315 762 NCSFGrSDCSLCRAANPDYRCAWCGGQSRCVYEA-------LCNTTS 801 pendqwldwswssskCp<-* Cp KIAA0315 802 --------------ECP 804 PF01833.14.ls: domain 1 of 3, from 806 to 895: score 81.5, E = 2.4e-21 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt PvIt+i+P++gpl+GG +iTi+Gsnlg +++++i+ +++ KIAA0315 806 PVITRIQPETGPLGGGIRITILGSNLG-VQAGDIQ---------RIS 842 fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdggg.sgd ++g++ C +++ +s +t ivC++ ++ ++ + + v+vd+ g+ KIAA0315 843 VAGRN--CSFQPERYSvsTRIVCVIEAAEtPFT----GGVEVDVFGkL-- 884 grssspvtFtY<-* grs+ +v+Ft+ KIAA0315 885 GRSPPNVQFTF 895 PF01833.14.fs: domain 1 of 3, from 806 to 895: score 79.7, E = 2.3e-22 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt PvIt+i+P++gpl+GG +iTi+Gsnlg +++++i+ +++ KIAA0315 806 PVITRIQPETGPLGGGIRITILGSNLG-VQAGDIQ---------RIS 842 fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdggg.sgd ++g++ C +++ +s +t ivC++ ++ ++ + + v+vd+ g+ KIAA0315 843 VAGRN--CSFQPERYSvsTRIVCVIEAAEtPFT----GGVEVDVFGkL-- 884 grssspvtFtY<-* grs+ +v+Ft+ KIAA0315 885 GRSPPNVQFTF 895 PF01833.14.fs: domain 2 of 3, from 898 to 981: score 74.0, E = 1e-20 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+ s++P +gp +GGt++Ti+G++l++gs+ ed++Vt KIAA0315 898 PKPLSVEPQQGPQAGGTTLTIHGTHLDTGSQ----------EDVRVT 934 fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs ++g+p C+v+ ++ ++C+t+p+a+ g+ vs++g++ + KIAA0315 935 LNGVP--CKVTKFGAQ--LQCVTGPQAtRGQML--LEVSYGGSP-----V 973 sspvtFtY<-* ++p+ F KIAA0315 974 PNPGIFFT 981 PF01833.14.ls: domain 2 of 3, from 898 to 981: score 75.8, E = 1.3e-19 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+ s++P +gp +GGt++Ti+G++l++gs+ ed++Vt KIAA0315 898 PKPLSVEPQQGPQAGGTTLTIHGTHLDTGSQ----------EDVRVT 934 fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs ++g+p C+v+ ++ ++C+t+p+a+ g+ vs++g++ + KIAA0315 935 LNGVP--CKVTKFGAQ--LQCVTGPQAtRGQML--LEVSYGGSP-----V 973 sspvtFtY<-* ++p+ F KIAA0315 974 PNPGIFFT 981 PF01833.14.fs: domain 3 of 3, from 986 to 1094: score 49.1, E = 1.6e-13 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt Pv +++P++++ sGG i +tG+++ ++ + +V+ KIAA0315 986 PVLRAFEPLRSFASGGRSINVTGQGFSLIQ-----------RFAMVV 1021 fggtpv...........pCdvisssss.....tqivCktPpva.ggpspp +++ + +++++ ++ + ++++ +++ +++t++v+ +P+v+++ ++ + KIAA0315 1022 IAEPLQswqppreaeslQPMTVVGTDYvfhndTKVVFLSPAVPeEPEAYN 1071 v.vtvsvdgggsgdgrssspvtFtY<-* ++v +++dg++ ++++++ + F+Y KIAA0315 1072 LtVLIEMDGHR--ALLRTEAGAFEY 1094 PF01833.14.ls: domain 3 of 3, from 986 to 1094: score 50.9, E = 3.9e-12 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt Pv +++P++++ sGG i +tG+++ ++ + +V+ KIAA0315 986 PVLRAFEPLRSFASGGRSINVTGQGFSLIQ-----------RFAMVV 1021 fggtpv...........pCdvisssss.....tqivCktPpva.ggpspp +++ + +++++ ++ + ++++ +++ +++t++v+ +P+v+++ ++ + KIAA0315 1022 IAEPLQswqppreaeslQPMTVVGTDYvfhndTKVVFLSPAVPeEPEAYN 1071 v.vtvsvdgggsgdgrssspvtFtY<-* ++v +++dg++ ++++++ + F+Y KIAA0315 1072 LtVLIEMDGHR--ALLRTEAGAFEY 1094 PF08337.2.fs: domain 1 of 1, from 1273 to 1808: score 1294.2, E = 0 *->sGiPfLDYktYaeRvFFpk..pGhedHPvLkdlevpesraptveegL +GiP+LDYktY++RvFF+++++G++d++++++l++pe+r+p ve++L KIAA0315 1273 AGIPVLDYKTYTDRVFFLPskDGDKDVMITGKLDIPEPRRPVVEQAL 1319 tqFsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcT +qFs+LLn+KsFL++fIhTLE+Qr+FS+R +v++ASLL+vaL+gKLeY+T KIAA0315 1320 YQFSNLLNSKSFLINFIHTLENQREFSARAKVYFASLLTVALHGKLEYYT 1369 dILktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKe dI++tL+++L+e++v++K nPKLmLRR+E+VVE+ML+NWmSiCLY++LK+ KIAA0315 1370 DIMHTLFLELLEQYVVAK-NPKLMLRRSETVVERMLSNWMSICLYQYLKD 1418 taGepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltl +aGepL++LfkAIK+Q+eKGPVDAv++kA+YTLn++ LL ++vey+plt+ KIAA0315 1419 SAGEPLYKLFKAIKHQVEKGPVDAVQKKAKYTLNDTGLLGDDVEYAPLTV 1468 nCVilevqpegdeadgvrnvpVkVLDCDTItQVKeKiLdavYkgtPySqR + Vi vq+eg +a +pVkVL+CDTI+QVKeKi+d+vY+g+P+S++ KIAA0315 1469 S-VI--VQDEGVDA-----IPVKVLNCDTISQVKEKIIDQVYRGQPCSCW 1510 PrvedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVpDGA Pr+++++LEWr+G++++ iL+D +D+Ts+ eg+ wKR+NTL+HY+V+DGA KIAA0315 1511 PRPDSVVLEWRPGSTAQ-ILSD-LDLTSQREGR-WKRVNTLMHYNVRDGA 1557 tlaLvpkqntassynisilStksekstsiltdnssryestlrldssddsl tl+L+++ ++++++ +ds++d++ KIAA0315 1558 TLILSKV----GVSQQP-------------------------EDSQQDLP 1578 gsrsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrkKai g+r++lle+++ ++wHLV+Ptde v+++k+kR+s+k+ke r+Kai KIAA0315 1579 GERHALLEEEN----RVWHLVRPTDE-VDEGKSKRGSVKEKE---RTKAI 1620 pEIYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFLDeq +EIYLTRLLs+KGTLQ+FVD++F+s+L+ +++a+P+AvKYfFDFLDeq KIAA0315 1621 TEIYLTRLLSVKGTLQQFVDNFFQSVLA---PGHAVPPAVKYFFDFLDEQ 1667 AekhgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAcLSV Aekh+I+D+D++HiWK+NsLPLRFWVNi+KNP+F+FD+h++++vDA+LSV KIAA0315 1668 AEKHNIQDEDTIHIWKTNSLPLRFWVNILKNPHFIFDVHVHEVVDASLSV 1717 iAQTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrdmpp iAQTFMDAC+++Eh+L++DSPSNKLLYAK+I++YkkmVe+YYk Ir+m++ KIAA0315 1718 IAQTFMDACTRTEHKLSRDSPSNKLLYAKEISTYKKMVEDYYKGIRQMVQ 1767 iSdQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* +SdQ+Mn++Lae+Sr+h++++ntlvAL++LY+Y++KY+d+I KIAA0315 1768 VSDQDMNTHLAEISRAHTDSLNTLVALHQLYQYTQKYYDEI 1808 PF08337.2.ls: domain 1 of 1, from 1273 to 1808: score 1295.9, E = 0 *->sGiPfLDYktYaeRvFFpk..pGhedHPvLkdlevpesraptveegL +GiP+LDYktY++RvFF+++++G++d++++++l++pe+r+p ve++L KIAA0315 1273 AGIPVLDYKTYTDRVFFLPskDGDKDVMITGKLDIPEPRRPVVEQAL 1319 tqFsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcT +qFs+LLn+KsFL++fIhTLE+Qr+FS+R +v++ASLL+vaL+gKLeY+T KIAA0315 1320 YQFSNLLNSKSFLINFIHTLENQREFSARAKVYFASLLTVALHGKLEYYT 1369 dILktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKe dI++tL+++L+e++v++K nPKLmLRR+E+VVE+ML+NWmSiCLY++LK+ KIAA0315 1370 DIMHTLFLELLEQYVVAK-NPKLMLRRSETVVERMLSNWMSICLYQYLKD 1418 taGepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltl +aGepL++LfkAIK+Q+eKGPVDAv++kA+YTLn++ LL ++vey+plt+ KIAA0315 1419 SAGEPLYKLFKAIKHQVEKGPVDAVQKKAKYTLNDTGLLGDDVEYAPLTV 1468 nCVilevqpegdeadgvrnvpVkVLDCDTItQVKeKiLdavYkgtPySqR + Vi vq+eg +a +pVkVL+CDTI+QVKeKi+d+vY+g+P+S++ KIAA0315 1469 S-VI--VQDEGVDA-----IPVKVLNCDTISQVKEKIIDQVYRGQPCSCW 1510 PrvedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVpDGA Pr+++++LEWr+G++++ iL+D +D+Ts+ eg+ wKR+NTL+HY+V+DGA KIAA0315 1511 PRPDSVVLEWRPGSTAQ-ILSD-LDLTSQREGR-WKRVNTLMHYNVRDGA 1557 tlaLvpkqntassynisilStksekstsiltdnssryestlrldssddsl tl+L+++ ++++++ +ds++d++ KIAA0315 1558 TLILSKV----GVSQQP-------------------------EDSQQDLP 1578 gsrsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrkKai g+r++lle+++ ++wHLV+Ptde v+++k+kR+s+k+ke r+Kai KIAA0315 1579 GERHALLEEEN----RVWHLVRPTDE-VDEGKSKRGSVKEKE---RTKAI 1620 pEIYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFLDeq +EIYLTRLLs+KGTLQ+FVD++F+s+L+ +++a+P+AvKYfFDFLDeq KIAA0315 1621 TEIYLTRLLSVKGTLQQFVDNFFQSVLA---PGHAVPPAVKYFFDFLDEQ 1667 AekhgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAcLSV Aekh+I+D+D++HiWK+NsLPLRFWVNi+KNP+F+FD+h++++vDA+LSV KIAA0315 1668 AEKHNIQDEDTIHIWKTNSLPLRFWVNILKNPHFIFDVHVHEVVDASLSV 1717 iAQTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrdmpp iAQTFMDAC+++Eh+L++DSPSNKLLYAK+I++YkkmVe+YYk Ir+m++ KIAA0315 1718 IAQTFMDACTRTEHKLSRDSPSNKLLYAKEISTYKKMVEDYYKGIRQMVQ 1767 iSdQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* +SdQ+Mn++Lae+Sr+h++++ntlvAL++LY+Y++KY+d+I KIAA0315 1768 VSDQDMNTHLAEISRAHTDSLNTLVALHQLYQYTQKYYDEI 1808 //