hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23170432/chunk_1/iprscan-20080501-23170432.nocrc
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Query sequence: KIAA0309
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 130.9    1.4e-34   1
SM00490                                                 103.1    3.2e-26   1
SM00573                                                  90.9    1.5e-22   1
SM00384                                                  43.0      4e-08   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00573      1/1     106   177 ..     1    73 []    90.9  1.5e-22
SM00487      1/1     595   787 ..     1   219 []   130.9  1.4e-34
SM00490      1/1    1896  1979 ..     1    86 []   103.1  3.2e-26
SM00384      1/3    2680  2692 ..     1    13 []    10.6      6.6
SM00384      2/3    2759  2771 ..     1    13 []    16.0     0.73
SM00384      3/3    2827  2839 ..     1    13 []    16.3     0.65

Alignments of top-scoring domains:
SM00573: domain 1 of 1, from 106 to 177: score 90.9, E = 1.5e-22
                   *->qkleeerRrKqhwdhlLeemiwhakDFkeerKwkiaaakKvakaVmd
                      +k +e++R+K hwd+l eem+w+++DF++er+wk   a Kv+++V +
    KIAA0309   106    PKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIR 152  

                   YhqnkekeeeReeekneknrlrkLae<-*
                   +h+++   eeR+  ++e+ +lr++a+   
    KIAA0309   153 HHEEQRQKEERA-RREEQAKLRRIAS    177  

SM00487: domain 1 of 1, from 595 to 787: score 130.9, E = 1.4e-34
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      + ++lr+yQ  +++wl+   +++ ++ila+++G+GKT+ ++++ll +
    KIAA0309   595    LRgQLREYQHIGLDWLVTMyekkLNGILADEMGLGKTI-QTISLLAH 640  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   l ++      kg+++++L++vP  + + +w+ elk+++ps        +k
    KIAA0309   641 LACE------KGNWGPHLIIVP-TSVMLNWEMELKRWCPS--------FK 675  

                   vvglygG.sktkekeqlrklksgkt...dilvtTpgrLldll.ngkglsl
                   ++ +yg ++    +++l++  + k++  ++ +t++  +l++ +    ++ 
    KIAA0309   676 ILTYYGAqK----ERKLKRQGWTKPnafHVCITSYKLVLQDHqA---FRR 718  

                   .nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp
                   +n++++ilDEa+++++ +     ++++q +  ++    + +rlll++Tp 
    KIAA0309   719 kNWRYLILDEAQNIKNFK-----SQRWQSLlNFN----SQRRLLLTGTPL 759  

                   .eienllklflnlpelfpnpvfisvgf..tlepieqf<-*
                   ++    l+ +++         f+++    ++ +++++   
    KIAA0309   760 qNSLMELWSLMH---------FLMPHVfqSHREFKEW    787  

SM00490: domain 1 of 1, from 1896 to 1979: score 103.1, E = 3.2e-26
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL
                      d l+++L+ +    g+ ++rl+G++  e+R++++e+F+++k+  +++
    KIAA0309  1896    DVLEQFLTYH----GHLYLRLDGSTRVEQRQALMERFNADKRifCFI 1938 

                   vaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   ++T+ +++G++++g+d+V++yd +w+p+++ Q+ +R++R+G   
    KIAA0309  1939 LSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIG    1979 

SM00384: domain 1 of 3, from 2680 to 2692: score 10.6, E = 6.6
                   *->kRkRGRPrKaksa<-*
                      kR+RGRP+K+  +   
    KIAA0309  2680    KRRRGRPPKKNRS    2692 

SM00384: domain 2 of 3, from 2759 to 2771: score 16.0, E = 0.73
                   *->kRkRGRPrKaksa<-*
                      kR+RGRP+Ka++    
    KIAA0309  2759    KRRRGRPPKARDL    2771 

SM00384: domain 3 of 3, from 2827 to 2839: score 16.3, E = 0.65
                   *->kRkRGRPrKaksa<-*
                      kRkRGRP+K++++   
    KIAA0309  2827    KRKRGRPPKNPPS    2839 

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