hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23170432/chunk_1/iprscan-20080501-23170432.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0309 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00176.13.ls SNF2 family N-terminal domain 381.0 1.7e-111 1 PF00176.13.fs SNF2 family N-terminal domain 379.1 6.1e-111 1 PF00271.21.fs Helicase conserved C-terminal domain 99.5 1.9e-28 1 PF00271.21.ls Helicase conserved C-terminal domain 101.5 2.3e-27 1 PF07529.4.fs HSA 91.6 7.6e-25 2 PF07529.4.ls HSA 88.6 1.8e-23 1 PF02178.9.fs AT hook motif 34.9 1.5e-09 3 PF02178.9.ls AT hook motif 40.9 4.1e-09 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07529.4.ls 1/1 106 177 .. 1 73 [] 88.6 1.8e-23 PF07529.4.fs 1/2 106 177 .. 1 73 [] 86.6 1.8e-23 PF00176.13.fs 1/1 602 888 .. 1 355 [] 379.1 6.1e-111 PF00176.13.ls 1/1 602 888 .. 1 355 [] 381.0 1.7e-111 PF00271.21.fs 1/1 1901 1979 .. 1 76 [] 99.5 1.9e-28 PF00271.21.ls 1/1 1901 1979 .. 1 76 [] 101.5 2.3e-27 PF02178.9.ls 1/3 2680 2692 .. 1 13 [] 9.7 0.45 PF02178.9.ls 2/3 2759 2771 .. 1 13 [] 15.5 0.045 PF02178.9.ls 3/3 2827 2839 .. 1 13 [] 15.7 0.042 Alignments of top-scoring domains: PF07529.4.ls: domain 1 of 1, from 106 to 177: score 88.6, E = 1.8e-23 *->qkleeerRrKqhhdelLeemqwhakDFkeehKwklakakKmakavaq +k +e++R+K h+d+l eemqw+++DF++e++wk+ a K+ ++v + KIAA0309 106 PKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIR 152 YhqnkekeeqrreekeekqRlqkLaa<-* +h+++ +e+r +ee+ +l+++a+ KIAA0309 153 HHEEQRQKEERA-RREEQAKLRRIAS 177 PF07529.4.fs: domain 1 of 2, from 106 to 177: score 86.6, E = 1.8e-23 *->qkleeerRrKqhhdelLeemqwhakDFkeehKwklakakKmakavaq +k +e++R+K h+d+l eemqw+++DF++e++wk+ a K+ ++v + KIAA0309 106 PKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIR 152 YhqnkekeeqrreekeekqRlqkLaa<-* +h+++ +e+r +ee+ +l+++a+ KIAA0309 153 HHEEQRQKEERA-RREEQAKLRRIAS 177 PF00176.13.fs: domain 1 of 1, from 602 to 888: score 379.1, E = 6.1e-111 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ G+ WL+ y++ +l+gILADEMGLGKT+QtIslla+ KIAA0309 602 YQHIGLDWLVTMYEK--------KLNGILADEMGLGKTIQTISLLAH 640 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l k ++ gp+L+++P+S++ nW+ E+++w+p +++i+ yyg++++ KIAA0309 641 LACEKGNW----GPHLIIVPTSVMLNWEMELKRWCP-SFKILTYYGAQKE 685 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin r + + + + k++ f+v+itsY+++++ d++ + n KIAA0309 686 R-----KLKRQGWTKPN---AFHVCITSYKLVLQ-----DHQAFRR--KN 720 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl wry+ilDE+ +iKN++S+ + l +++ +++RLlLTGTPlQN+L El KIAA0309 721 WRYLILDEA-QNIKNFKSQR--WQSLLNFN-SQRRLLLTGTPLQNSLMEL 766 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr wsL +FlmP +F+s +F++wf+np + KIAA0309 767 WSLMHFLMPHVFQSH-------REFKEWFSNPLTGMI------------- 796 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels + ++e + l++rLhk+l+pflLRR+K+dvek+ p+ K+e+v++c+ls KIAA0309 797 -EGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPK--KYEHVIRCRLS 843 klQkelYkkflke.eskdvkaindserreggkeknegksrllnlimqLrK k Q+ lY++f ++ +k+ a + + ++++n++mqLrK KIAA0309 844 KRQRCLYDDFMAQtTTKETLATGH-F------------MSVINILMQLRK 880 icNfHPyLf<-* +cN HP Lf KIAA0309 881 VCN-HPNLF 888 PF00176.13.ls: domain 1 of 1, from 602 to 888: score 381.0, E = 1.7e-111 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ G+ WL+ y++ +l+gILADEMGLGKT+QtIslla+ KIAA0309 602 YQHIGLDWLVTMYEK--------KLNGILADEMGLGKTIQTISLLAH 640 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l k ++ gp+L+++P+S++ nW+ E+++w+p +++i+ yyg++++ KIAA0309 641 LACEKGNW----GPHLIIVPTSVMLNWEMELKRWCP-SFKILTYYGAQKE 685 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin r + + + + k++ f+v+itsY+++++ d++ + n KIAA0309 686 R-----KLKRQGWTKPN---AFHVCITSYKLVLQ-----DHQAFRR--KN 720 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl wry+ilDE+ +iKN++S+ + l +++ +++RLlLTGTPlQN+L El KIAA0309 721 WRYLILDEA-QNIKNFKSQR--WQSLLNFN-SQRRLLLTGTPLQNSLMEL 766 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr wsL +FlmP +F+s +F++wf+np + KIAA0309 767 WSLMHFLMPHVFQSH-------REFKEWFSNPLTGMI------------- 796 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels + ++e + l++rLhk+l+pflLRR+K+dvek+ p+ K+e+v++c+ls KIAA0309 797 -EGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPK--KYEHVIRCRLS 843 klQkelYkkflke.eskdvkaindserreggkeknegksrllnlimqLrK k Q+ lY++f ++ +k+ a + + ++++n++mqLrK KIAA0309 844 KRQRCLYDDFMAQtTTKETLATGH-F------------MSVINILMQLRK 880 icNfHPyLf<-* +cN HP Lf KIAA0309 881 VCN-HPNLF 888 PF00271.21.fs: domain 1 of 1, from 1901 to 1979: score 99.5, E = 1.9e-28 *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG +l+++g+ ++rl+G++ e+R++++e+F+++k+ +++++T+ +g+G KIAA0309 1901 FLtYHGHLYLRLDGSTRVEQRQALMERFNADKRifCFILSTRSGGVG 1947 iDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* ++++++++V++yd++wnp+++ Q+ +R++R+G KIAA0309 1948 VNLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 1979 PF00271.21.ls: domain 1 of 1, from 1901 to 1979: score 101.5, E = 2.3e-27 *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG +l+++g+ ++rl+G++ e+R++++e+F+++k+ +++++T+ +g+G KIAA0309 1901 FLtYHGHLYLRLDGSTRVEQRQALMERFNADKRifCFILSTRSGGVG 1947 iDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* ++++++++V++yd++wnp+++ Q+ +R++R+G KIAA0309 1948 VNLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 1979 PF02178.9.ls: domain 1 of 3, from 2680 to 2692: score 9.7, E = 0.45 *->kRkRGRPrKaata<-* kR+RGRP+K++ + KIAA0309 2680 KRRRGRPPKKNRS 2692 PF02178.9.ls: domain 2 of 3, from 2759 to 2771: score 15.5, E = 0.045 *->kRkRGRPrKaata<-* kR+RGRP+Ka++ KIAA0309 2759 KRRRGRPPKARDL 2771 PF02178.9.ls: domain 3 of 3, from 2827 to 2839: score 15.7, E = 0.042 *->kRkRGRPrKaata<-* kRkRGRP+K++++ KIAA0309 2827 KRKRGRPPKNPPS 2839 //