hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23144923/chunk_1/iprscan-20080501-23144923.nocrc
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Query sequence: KIAA0308
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00592                                                 177.4    1.4e-48   2
SM00487                                                 135.3    6.5e-36   1
SM00490                                                  89.8    3.2e-22   1
SM00298                                                  89.2      5e-22   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00298      1/2     565   631 ..     1    63 []    51.0  1.5e-10
SM00298      2/2     648   706 ..     1    63 []    38.1  1.1e-06
SM00487      1/1     733   934 ..     1   219 []   135.3  6.5e-36
SM00490      1/1    1089  1173 ..     1    86 []    89.8  3.2e-22
SM00592      1/2    2344  2393 ..     1    50 []   103.0  3.5e-26
SM00592      2/2    2418  2462 ..     1    50 []    74.4  1.4e-17

Alignments of top-scoring domains:
SM00298: domain 1 of 2, from 565 to 631: score 51.0, E = 1.5e-10
                   *->eyeivEkIldhrw.......ekkkgeveYLVKWkGysysedtWEpee
                      + +iv+kIl +r+ +++ ++      +e++VK+k+ysy +++W +ee
    KIAA0308   565    DAAIVDKILSSRTvkkeispGVMIDTEEFFVKYKNYSYLHCEWATEE 611  

                   nleemLkkkncekkldeykkrek<-*
                   +l   Lk+k+ ++k++++k r++   
    KIAA0308   612 QL---LKDKRIQQKIKRFKLRQA    631  

SM00298: domain 2 of 2, from 648 to 706: score 38.1, E = 1.1e-06
                   *->eyeivEkIldhrw....ekkkgeveYLVKWkGysysedtWEpeenle
                      +y++v+++l + + +++ +++ ++ YLVKW  ++y++ tWE  e++ 
    KIAA0308   648    DYVEVDRVLEVSFcedkDTGEPVIYYLVKWCSLPYEDSTWELKEDV- 693  

                   emLkkkncekkldeykkrek<-*
                          +  k++e+++ ++   
    KIAA0308   694 -------DLAKIEEFEQLQA    706  

SM00487: domain 1 of 1, from 733 to 934: score 135.3, E = 6.5e-36
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      ++++lr+yQ+e+++wll +  ++r++ila+++G+GKT++ + +l e 
    KIAA0308   733    NGnQLREYQLEGLNWLLFNwynrRNCILADEMGLGKTIQSITFLYEI 779  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   l+ g         ++++L+++P  + +++w++e++ +            +
    KIAA0308   780 LLTG--------IRGPFLIIAP-LSTIANWEREFRTWT----------DI 810  

                   vvglygG.sktkekeqlrklksgkt..............dilvtTpgrLl
                   +v++y+G+ +    +q+ +  +  +++++++  ++  + + ++tT +++l
    KIAA0308   811 NVVVYHGsLI---SRQMIQQYEMYFrdsqgriirgayrfQAIITTFEMIL 857  

                   dll.ngkglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpkn
                      ++   l+  ++++vi+DEaHrl+        +  ++l++ lk++ + 
    KIAA0308   858 GGCgE---LNAiEWRCVIIDEAHRLK--------NKNCKLLeGLKLM-NL 895  

                   rqrlllSATppeienllklflnlpelfpnpvfisvgf..tlepieqf<-*
                    +++ll++Tp  ++n+ +++++      +++f+ + + ++   + q+   
    KIAA0308   896 EHKVLLTGTP--LQNTVEELFS------LLHFLEPLRfpSESTFMQE    934  

SM00490: domain 1 of 1, from 1089 to 1173: score 89.8, E = 3.2e-22
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                      d+l+++L ++     + + r++G+   + R++++++F k ++++ ++
    KIAA0308  1089    DILEDYLIHK----RYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVF 1131 

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   L++T+++++G++++++d+ I++d +w+p++++Q+  R++R+G   
    KIAA0308  1132 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG    1173 

SM00592: domain 1 of 2, from 2344 to 2393: score 103.0, E = 3.5e-26
                   *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP
                      d+e++VpVin+++G++L+GddAPk+kdLe+WL+e+P+yv+Dlg+++P
    KIAA0308  2344    DTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIP 2390 

                   rsa<-*
                   r++   
    KIAA0308  2391 RMQ    2393 

SM00592: domain 2 of 2, from 2418 to 2462: score 74.4, E = 1.4e-17
                   *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP
                      +geeRV+ in+++ +k++G++AP++kdL+r+L+en ey      vaP
    KIAA0308  2418    TGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEY-----GVAP 2459 

                   rsa<-*
                   ++    
    KIAA0308  2460 EWG    2462 

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