hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23144923/chunk_1/iprscan-20080501-23144923.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0308 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00176.13.ls SNF2 family N-terminal domain 331.9 1e-96 1 PF00176.13.fs SNF2 family N-terminal domain 330.1 3.6e-96 1 PF07533.6.ls Associated with TFs and helicases 174.9 1.8e-49 2 PF07533.6.fs Associated with TFs and helicases 171.0 1.2e-48 2 PF00385.14.ls 'chromo' (CHRromatin Organisation MOdifier 109.8 7.4e-30 2 PF00385.14.fs 'chromo' (CHRromatin Organisation MOdifier 106.1 9.7e-29 2 PF00271.21.fs Helicase conserved C-terminal domain 85.8 1.9e-24 1 PF00271.21.ls Helicase conserved C-terminal domain 87.8 3.1e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00385.14.fs 1/2 567 629 .. 1 68 [] 49.9 7.7e-13 PF00385.14.ls 1/2 567 629 .. 1 68 [] 51.8 2.1e-12 PF00385.14.ls 2/2 650 704 .. 1 68 [] 58.0 3e-14 PF00385.14.fs 2/2 650 704 .. 1 68 [] 56.2 1.5e-14 PF00176.13.fs 1/1 740 1027 .. 1 355 [] 330.1 3.6e-96 PF00176.13.ls 1/1 740 1027 .. 1 355 [] 331.9 1e-96 PF00271.21.ls 1/1 1094 1173 .. 1 76 [] 87.8 3.1e-23 PF00271.21.fs 1/1 1094 1173 .. 1 76 [] 85.8 1.9e-24 PF07533.6.ls 1/2 2344 2393 .. 1 49 [] 99.7 7.8e-27 PF07533.6.fs 1/2 2344 2393 .. 1 49 [] 97.7 2e-27 PF07533.6.ls 2/2 2418 2462 .. 1 49 [] 75.2 1.9e-19 PF07533.6.fs 2/2 2418 2462 .. 1 49 [] 73.3 2.4e-20 Alignments of top-scoring domains: PF00385.14.fs: domain 1 of 2, from 567 to 629: score 49.9, E = 7.7e-13 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp +V++IL +r++k+ + ++ +i+++e++VK+k+y+y ++ W + KIAA0308 567 AIVDKILSSRTVKKEISPGV----MIDTEEFFVKYKNYSYLHCEWAT 609 eenLkack.gfpelkieefeqr<-* ee L ++k++ ++ i++f+ r KIAA0308 610 EEQLLKDKrIQQK--IKRFKLR 629 PF00385.14.ls: domain 1 of 2, from 567 to 629: score 51.8, E = 2.1e-12 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp +V++IL +r++k+ + ++ +i+++e++VK+k+y+y ++ W + KIAA0308 567 AIVDKILSSRTVKKEISPGV----MIDTEEFFVKYKNYSYLHCEWAT 609 eenLkack.gfpelkieefeqr<-* ee L ++k++ ++ i++f+ r KIAA0308 610 EEQLLKDKrIQQK--IKRFKLR 629 PF00385.14.ls: domain 2 of 2, from 650 to 704: score 58.0, E = 3e-14 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp eV+r+L+ ++++++ +++p + +YLVKW+ +pye++TWE KIAA0308 650 VEVDRVLEVSFCEDKDTGEP-------VIYYLVKWCSLPYEDSTWEL 689 eenLkackgfpelkieefeqr<-* e+++ + kieefeq KIAA0308 690 KEDVDLA------KIEEFEQL 704 PF00385.14.fs: domain 2 of 2, from 650 to 704: score 56.2, E = 1.5e-14 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp eV+r+L+ ++++++ +++p + +YLVKW+ +pye++TWE KIAA0308 650 VEVDRVLEVSFCEDKDTGEP-------VIYYLVKWCSLPYEDSTWEL 689 eenLkackgfpelkieefeqr<-* e+++ + kieefeq KIAA0308 690 KEDVDLA------KIEEFEQL 704 PF00176.13.fs: domain 1 of 1, from 740 to 1027: score 330.1, E = 3.6e-96 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleG+nWL + + n +++ILADEMGLGKT+Q+I +l KIAA0308 740 YQLEGLNWLLFNWYN--------RRNCILADEMGLGKTIQSITFLYE 778 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns ++ + gpfL+++PlSt+ nW++Ef +w+ +n+vvy+g+ s KIAA0308 779 ILLTGI-R----GPFLIIAPLSTIANWEREFRTWTD--INVVVYHGSLIS 821 rdqd.......rkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkde r ++++ + r+++ + ++ +r f+ +it++e+i+ e KIAA0308 822 RQMIqqyemyfRDSQG--RIIRGAYR--FQAIITTFEMILG-----GCGE 862 LkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPl L+ i+wr vi+DE+ Hr+KN ++kl ++ lk + +++lLTGTPl KIAA0308 863 LNA--IEWRCVIIDEA-HRLKNKNCKL--LEGLKLMN-LEHKVLLTGTPL 906 QNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLa QN ++El+sLl+Fl P +F s ++F+++f + +e+ KIAA0308 907 QNTVEELFSLLHFLEPLRFPSE-------STFMQEFGDLKTEE------- 942 datefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKtey +++ L+ ilkp +LRRlK+dvek L p K e+ KIAA0308 943 -----------------QVQKLQAILKPMMLRRLKEDVEKKLAP--KEET 973 vlfcelsklQkelYkkflkeeskdvkaindserreggkeknegksrllnl ++++el+ +Qk++Y+ +l +k++ ++ ++ g + +l n KIAA0308 974 IIEVELTNIQKKYYRAIL---EKNFSFLSKG----AGQT---NVPNLVNT 1013 imqLrKicNfHPyLf<-* +m+LrK+cN HPyL+ KIAA0308 1014 MMELRKCCN-HPYLI 1027 PF00176.13.ls: domain 1 of 1, from 740 to 1027: score 331.9, E = 1e-96 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleG+nWL + + n +++ILADEMGLGKT+Q+I +l KIAA0308 740 YQLEGLNWLLFNWYN--------RRNCILADEMGLGKTIQSITFLYE 778 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns ++ + gpfL+++PlSt+ nW++Ef +w+ +n+vvy+g+ s KIAA0308 779 ILLTGI-R----GPFLIIAPLSTIANWEREFRTWTD--INVVVYHGSLIS 821 rdqd.......rkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkde r ++++ + r+++ + ++ +r f+ +it++e+i+ e KIAA0308 822 RQMIqqyemyfRDSQG--RIIRGAYR--FQAIITTFEMILG-----GCGE 862 LkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPl L+ i+wr vi+DE+ Hr+KN ++kl ++ lk + +++lLTGTPl KIAA0308 863 LNA--IEWRCVIIDEA-HRLKNKNCKL--LEGLKLMN-LEHKVLLTGTPL 906 QNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLa QN ++El+sLl+Fl P +F s ++F+++f + +e+ KIAA0308 907 QNTVEELFSLLHFLEPLRFPSE-------STFMQEFGDLKTEE------- 942 datefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKtey +++ L+ ilkp +LRRlK+dvek L p K e+ KIAA0308 943 -----------------QVQKLQAILKPMMLRRLKEDVEKKLAP--KEET 973 vlfcelsklQkelYkkflkeeskdvkaindserreggkeknegksrllnl ++++el+ +Qk++Y+ +l +k++ ++ ++ g + +l n KIAA0308 974 IIEVELTNIQKKYYRAIL---EKNFSFLSKG----AGQT---NVPNLVNT 1013 imqLrKicNfHPyLf<-* +m+LrK+cN HPyL+ KIAA0308 1014 MMELRKCCN-HPYLI 1027 PF00271.21.ls: domain 1 of 1, from 1094 to 1173: score 87.8, E = 3.1e-23 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l + + + r++G+ + R++++++F + +s++ ++L++T+++g+ KIAA0308 1094 YLiHKRYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVFLLCTRAGGL 1140 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi+++++++ I++d++wnp++++Q+ R++R+G KIAA0308 1141 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1173 PF00271.21.fs: domain 1 of 1, from 1094 to 1173: score 85.8, E = 1.9e-24 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l + + + r++G+ + R++++++F + +s++ ++L++T+++g+ KIAA0308 1094 YLiHKRYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVFLLCTRAGGL 1140 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi+++++++ I++d++wnp++++Q+ R++R+G KIAA0308 1141 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1173 PF07533.6.ls: domain 1 of 2, from 2344 to 2393: score 99.7, E = 7.8e-27 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyV.DlgevaP d+e +VpVin+k+G+rL+GddAPk+kdLe+WL+e+PgyV+Dlg+++P KIAA0308 2344 DTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVeDLGAFIP 2390 rst<-* r++ KIAA0308 2391 RMQ 2393 PF07533.6.fs: domain 1 of 2, from 2344 to 2393: score 97.7, E = 2e-27 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyV.DlgevaP d+e +VpVin+k+G+rL+GddAPk+kdLe+WL+e+PgyV+Dlg+++P KIAA0308 2344 DTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVeDLGAFIP 2390 rst<-* r++ KIAA0308 2391 RMQ 2393 PF07533.6.ls: domain 2 of 2, from 2418 to 2462: score 75.2, E = 1.9e-19 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr +geeRV+ inr++ ++++G++AP++kdL+r+L+en +y vaP+ KIAA0308 2418 TGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEY----GVAPE 2460 st<-* ++ KIAA0308 2461 WG 2462 PF07533.6.fs: domain 2 of 2, from 2418 to 2462: score 73.3, E = 2.4e-20 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr +geeRV+ inr++ ++++G++AP++kdL+r+L+en +y vaP+ KIAA0308 2418 TGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEY----GVAPE 2460 st<-* ++ KIAA0308 2461 WG 2462 //