# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg00042.fasta.huge -Q ../query/KIAA0305.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0305, 1547 aa vs ./tmplib.23147 library 1985958 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.2392+/-0.00635; mu= 18.4676+/- 0.434 mean_var=137.1808+/-33.340, 0's: 0 Z-trim: 10 B-trim: 89 in 1/39 Lambda= 0.109503 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1362 ( 699 res) fj02381 ( 699) 310 61.5 6.7e-10 KIAA0647 ( 1195 res) hj03819s1 (1195) 263 54.4 1.6e-07 KIAA1537 ( 619 res) fj02581s1 ( 619) 243 50.9 9.6e-07 KIAA0371 ( 1203 res) hh00252 (1203) 235 50.0 3.4e-06 KIAA0321 ( 1542 res) hg00426 (1542) 233 49.8 4.8e-06 KIAA1643 ( 993 res) hh10131(revised) ( 993) 223 48.0 1.1e-05 KIAA0993 ( 1556 res) bf03014 (1556) 212 46.5 4.9e-05 KIAA1589 ( 816 res) fj08951 ( 816) 201 44.4 0.00011 KIAA1255 ( 1232 res) hh14633s1 (1232) 191 43.1 0.00042 >>KIAA1362 ( 699 res) fj02381 (699 aa) initn: 320 init1: 246 opt: 310 Z-score: 269.6 bits: 61.5 E(): 6.7e-10 Smith-Waterman score: 311; 29.963% identity (55.431% similar) in 267 aa overlap (624-879:451-682) 600 610 620 630 640 650 KIAA03 IGESHGINIICETVDKQNTIENGLSLGEKSTIPVQQGLPTSKSEITNQLSVSDINSQSVG : :::.:. ...:.::.. KIAA13 VFLKEGILMKLSRKVMQPRMFFLFNDALLYTTPVQSGM----YKLNNMLSLA-------- 430 440 450 460 660 670 680 690 700 KIAA03 GARPKQLFSLPSRTRSSKDLNKPDVPDTIESEPSTA----DTVVPITCAIDSTADPQVSF : . .. :.. ...:. .: .. :.: . . :. ::. : ...: KIAA13 GMKVRK----PTQEAYQNELKIESVERSFILSASSATERDEWLEAISRAIEEYAKKRITF 470 480 490 500 510 520 710 720 730 740 750 760 KIAA03 NSNYIDIESNSEGGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFT . :..::. .:. : ::.: : :.::..: :: : .:: KIAA13 CPSRSLDEADSEN-------KEEVSP---------LGSKAPIWIPDTRATMCMICTSEFT 530 540 550 560 770 780 790 800 810 820 KIAA03 FTKRRHHCRACGKVFCGVCCNRKCKLQYLEKE-ARVCVVCYETISKA--QAFERMMSPTG .: ::::::::::. : .: . : :.::... :::: :.. ..: : :. :: KIAA13 LTWRRHHCRACGKIVCQACSSNKYGLDYLKNQPARVCEHCFQELQKLDHQHSPRIGSP-- 570 580 590 600 610 620 830 840 850 860 870 880 KIAA03 SNLKSNHSDECTTVQP-PQENQTSSIPSPATLPVSA-LKQPGVEGLC--SKEQKRVWFAD .: :: : .... :. . ..::. : ::: .. .. : :: .:. : KIAA13 GNHKSPSSALSSVLHSIPSGRKQKKIPA-ALKEVSANTEDSSMSGYLYRSKGNKKPWKHF 630 640 650 660 670 680 890 900 910 920 930 940 KIAA03 GILPNGEVADTTKLSSGSKRCSEDFSPLSPDVPMTVNTVDHSHSTTVEKPNNETGDITRN KIAA13 WFVIKNKVLYTCCK 690 >>KIAA0647 ( 1195 res) hj03819s1 (1195 aa) initn: 288 init1: 211 opt: 263 Z-score: 227.1 bits: 54.4 E(): 1.6e-07 Smith-Waterman score: 263; 36.154% identity (61.538% similar) in 130 aa overlap (697-821:1056-1182) 670 680 690 700 710 720 KIAA03 TRSSKDLNKPDVPDTIESEPSTADTVVPITCAIDSTADPQVSFNSNYIDI-ESNSEGGSS :: :.: ....... . ::.. . KIAA06 RQIEAGYKQEVEQLRRQVRELQMRLDIRHCCA--PPAEPPMDYEDDFTCLKESDGSDTED 1030 1040 1050 1060 1070 1080 730 740 750 760 770 780 KIAA03 FVTAN-EDSVPENTCKEGLVLGQKQPT-WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKV : . . :: . : . : . . . : :::: : .:.::. .: ..::::::: ::.: KIAA06 FGSDHSEDCLSEAS-WEPVDKKETEVTRWVPDHMASHCYNCDCEFWLAKRRHHCRNCGNV 1090 1100 1110 1120 1130 1140 790 800 810 820 830 840 KIAA03 FCGVCCNRKCKL--QYLEKEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDECTTVQ ::. ::. : . : : . :: ::: :. ..: : : KIAA06 FCAGCCHLKLPIPDQQLYDPVLVCNSCYEHIQVSRARELMSQQLKKPIATASS 1150 1160 1170 1180 1190 850 860 870 880 890 900 KIAA03 PPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTKLSSGSK >>KIAA1537 ( 619 res) fj02581s1 (619 aa) initn: 247 init1: 208 opt: 243 Z-score: 213.0 bits: 50.9 E(): 9.6e-07 Smith-Waterman score: 243; 21.799% identity (55.017% similar) in 289 aa overlap (538-809:329-607) 510 520 530 540 550 560 KIAA03 INTFSSNDMDGQDLDYFNIDEGAKSGPLISDAELDAFLTEQYLQTTNIKSFEENVNDSKS . :: . .. .. .: .:........ KIAA15 TYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQD 300 310 320 330 340 350 570 580 590 600 610 620 KIAA03 QMNQIDMKGLDDGNIN-NIYFNAEAGAIGESHGINIICETVDKQNTIENGLSLGEKSTIP . . .. . :: ..: . ... : .. .:: . .: : : .. :. KIAA15 TLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTNKITAAMRQLEQRLQQ 360 370 380 390 400 410 630 640 650 660 670 KIAA03 VQQGLPTSKSE----ITNQLSVSDINSQSVGGARPKQLFSLPS--------RTRSSKDLN .... ...: . . :: :: ..... . ::: .: . : ..::. KIAA15 AEKAQMEAEDEDEKYLQECLSKSDSLQKQIS-QKEKQLVQLETDLKIEKEWRQTLQEDLQ 420 430 440 450 460 470 680 690 700 710 720 730 KIAA03 KPDVPDTIESEPSTADTVVPITCAIDSTADPQVSFNSNYIDIESN-SEGGSSFVTAN--- : :.. . .. .. . . . : . .... : . :. .: :... .. KIAA15 KEK--DALSHLRNETQQIISLKKEFLNLQDENQQLKKIYHEQEQALQELGNKLSESKLKI 480 490 500 510 520 530 740 750 760 770 780 790 KIAA03 EDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN :: : .::: :. :.:: .: :. .:...::.:::: ::..::..: . KIAA15 EDIKEANKALQGLV-------WLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSD 540 550 560 570 580 800 810 820 830 840 850 KIAA03 RKCKLQYLEKEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDECTTVQPPQENQTSS . : : .::: :. KIAA15 NELPLPSSPKPVRVCDSCHALLIQRCSSNLP 590 600 610 >>KIAA0371 ( 1203 res) hh00252 (1203 aa) initn: 341 init1: 181 opt: 235 Z-score: 203.1 bits: 50.0 E(): 3.4e-06 Smith-Waterman score: 235; 44.444% identity (69.841% similar) in 63 aa overlap (752-812:1121-1183) 730 740 750 760 770 780 KIAA03 GGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACG :.:: : .:. :. : ...:.:::: :: KIAA03 DQNCLSRCSTEIFSEASWEQVDKQDTEMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCG 1100 1110 1120 1130 1140 1150 790 800 810 820 830 KIAA03 KVFCGVCCNRKCKL--QYLEKEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDECTT .:::. :::.: . : : . .::: :: .. KIAA03 NVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSLHPTSSSIDLELDKPIAATSN 1160 1170 1180 1190 1200 840 850 860 870 880 890 KIAA03 VQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTKLSSG >>KIAA0321 ( 1542 res) hg00426 (1542 aa) initn: 201 init1: 119 opt: 233 Z-score: 200.3 bits: 49.8 E(): 4.8e-06 Smith-Waterman score: 233; 27.976% identity (52.976% similar) in 168 aa overlap (689-847:743-910) 660 670 680 690 700 710 KIAA03 QLFSLPSRTRSSKDLNKPDVPDTIESEPSTADTVVPITCAIDSTADPQVSFNSNYIDIES .:.:. . . ..:::.. : .. KIAA03 IGFTMDEVDSLLSRYAEKALDFPYPQREKRSDSVIHLQEIVHQAADPETLPRSPSAEFSP 720 730 740 750 760 770 720 730 740 750 760 770 KIAA03 NSEGGSSFV---TANEDSVPENTCKEGLVLGQKQPT---WVPDSEAPNCM-NCQVKFTFT . : : . . : : : . .. .: :. :::: :: :. .::. KIAA03 AAPPGISSIHSPSLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMF 780 790 800 810 820 830 780 790 800 810 820 KIAA03 KRRHHCRACGKVFCGVCCNRKCKLQYL-EKEARVCVVCYETISKAQAFERMMSPTG-SNL .:::::: ::.. :. : ..: .. :. :::: :: .: : .: . .. KIAA03 NRRHHCRRCGRLVCSSCSTKKMVVEGCRENPARVCDQCYSYCNKDVPEEPSEKPEALDSS 840 850 860 870 880 890 830 840 850 860 870 880 KIAA03 KSNHSDECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGE ::. .:. :. .. KIAA03 KSESPPYSFVVRVPKADEVEWILDLKEEENELVRSEFYYEQAPSASLCIAILNLHRDSIA 900 910 920 930 940 950 >>KIAA1643 ( 993 res) hh10131(revised) (993 aa) initn: 217 init1: 184 opt: 223 Z-score: 193.8 bits: 48.0 E(): 1.1e-05 Smith-Waterman score: 223; 45.161% identity (67.742% similar) in 62 aa overlap (750-809:918-979) 720 730 740 750 760 770 KIAA03 SEGGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRA : :::: : :.. :: .:.::::. KIAA16 AALEDCALCQETLSSSELAAKTRDGDFEDPPEWVPDEACGFCTACKAPFTVIRRKHHCRS 890 900 910 920 930 940 780 790 800 810 820 830 KIAA03 CGKVFCGVCCNRKCKL-QYLE-KEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDEC :::.::. : ... : .: . : .:::. :: KIAA16 CGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKAGL 950 960 970 980 990 840 850 860 870 880 890 KIAA03 TTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTKLS >>KIAA0993 ( 1556 res) bf03014 (1556 aa) initn: 235 init1: 170 opt: 212 Z-score: 182.4 bits: 46.5 E(): 4.9e-05 Smith-Waterman score: 212; 37.143% identity (70.000% similar) in 70 aa overlap (752-819:1481-1550) 730 740 750 760 770 780 KIAA03 GGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACG :: : . .: .:.:.:..:.:::::: :: KIAA09 DHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCG 1460 1470 1480 1490 1500 1510 790 800 810 820 830 KIAA03 KVFCGVCCNRKCKLQYLE--KEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDECTT ..:: : . ... :. . .::: :: .... .. : KIAA09 QLFCQKCSRFQSEIKRLKISSPVRVCQNCYYNLQHERGSEDGPRNC 1520 1530 1540 1550 840 850 860 870 880 890 KIAA03 VQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTKLSSG >>KIAA1589 ( 816 res) fj08951 (816 aa) initn: 259 init1: 173 opt: 201 Z-score: 175.9 bits: 44.4 E(): 0.00011 Smith-Waterman score: 201; 40.000% identity (60.000% similar) in 70 aa overlap (742-808:740-809) 720 730 740 750 760 770 KIAA03 NYIDIESNSEGGSSFVTANEDSVPENTCKEGLVLGQKQPT-WVPDSEAPNCMNCQVKFTF ::: .:. :::: : .: ::. .:.. KIAA15 DEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSI 710 720 730 740 750 760 780 790 800 810 820 KIAA03 TKRRHHCRACGKVFCGVCCN--RKCKLQYLEKEARVCVVCYETISKAQAFERMMSPTGSN .:::::::. :: : . : . .. .::: : KIAA15 KLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL 770 780 790 800 810 830 840 850 860 870 880 KIAA03 LKSNHSDECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNG >>KIAA1255 ( 1232 res) hh14633s1 (1232 aa) initn: 77 init1: 77 opt: 191 Z-score: 165.5 bits: 43.1 E(): 0.00042 Smith-Waterman score: 191; 33.824% identity (67.647% similar) in 68 aa overlap (748-813:1163-1227) 720 730 740 750 760 770 KIAA03 SNSEGGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHC :.: : : :..: ..: : :.::: KIAA12 LGVNNNQGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGS---YCYECTARFGVTTRKHHC 1140 1150 1160 1170 1180 780 790 800 810 820 830 KIAA03 RACGKVFCGVCCNRKCKL-QY-LEKEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSD : ::...: : ... . .. :.: .::: .:..... KIAA12 RHCGRLLCHKCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS 1190 1200 1210 1220 1230 840 850 860 870 880 890 KIAA03 ECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTK 1547 residues in 1 query sequences 1985958 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:31 2008 done: Thu Dec 18 15:15:32 2008 Total Scan time: 0.870 Total Display time: 0.300 Function used was FASTA [version 34.26.5 April 26, 2007]