hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23073274/chunk_1/iprscan-20080501-23073274.nocrc
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Query sequence: KIAA0304
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00317                                                 156.4    2.9e-42   1
SM00249                                                 137.8    1.2e-36   4
SM00542                                                 137.7    1.2e-36   1
SM00541                                                  79.6    3.8e-19   1
SM00508                                                  29.0    0.00067   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00249     1/4     903   950 ..     1    39 []    29.7  0.00039
SM00249     2/4     951  1001 ..     1    39 []    51.9  8.6e-11
SM00249     3/4    1037  1094 ..     1    39 []    37.2  2.2e-06
SM00249     4/4    1340  1386 ..     1    39 []    19.0     0.65
SM00541     1/1    1439  1482 ..     1    46 []    79.6  3.8e-19
SM00542     1/1    2113  2198 ..     1    97 []   137.7  1.2e-36
SM00317     1/1    2275  2397 ..     1   114 []   156.4  2.9e-42
SM00508     1/1    2399  2415 .]     1    17 []    29.0  0.00067

Alignments of top-scoring domains:
SM00249: domain 1 of 4, from 903 to 950: score 29.7, E = 0.00039
                   *->yC.vCgk...g.llqCdkgCdrwyHv.Clgpple...epdg.wyCpr
                      +C +C +++ ++l++C   C++ +H+ Cl  ++++ + + ++w+C r
    KIAA0304   903    VClLCASkglHeLVFCQ-VCCDPFHPfCLEEAERplpQHHDtWCCRR 948  

                   Ck<-*
                   Ck   
    KIAA0304   949 CK    950  

SM00249: domain 2 of 4, from 951 to 1001: score 51.9, E = 8.6e-11
                   *->yC.vCgk.....g.llqCdkgCdrwyHv.Clgpple....epdg.wy
                      +C+vCg++++++ +ll C+ +C+++yH+ Clgp+ +++ + ++ +w+
    KIAA0304   951    FChVCGRkgrgsKhLLECE-RCRHAYHPaCLGPSYPtratRKRRhWI 996  

                   CprCk<-*
                   C+ C+   
    KIAA0304   997 CSACV    1001 

SM00249: domain 3 of 4, from 1037 to 1094: score 37.2, E = 2.2e-06
                   *->yC.vCgk........g.llqCdkgCdrwyHv.Clgpple........
                      yC++C +  ++++ +++++qC  +Cd+w+H +C g+++e+ +  ++ 
    KIAA0304  1037    YCpICTRcyedndyeSkMMQCA-QCDHWVHAkCEGLSDEdyeilsgl 1082 

                   epdg.wyCprCk<-*
                   + +  + C  C    
    KIAA0304  1083 PDSVlYTCGPCA    1094 

SM00249: domain 4 of 4, from 1340 to 1386: score 19.0, E = 0.65
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple..epdg.wyCprCk
                      +C++C k+g +++C   +C   +H+ C++ + +    d++ +C +++
    KIAA0304  1340    RCeLCLKpGaTVGCClSSCLSNFHFmCARASYCifQDDKkVFCQKHT 1386 

                   <-*
                      
    KIAA0304     -     -    

SM00541: domain 1 of 1, from 1439 to 1482: score 79.6, E = 3.8e-19
                   *->llpiqsklfhsesaIfPvGYkatRkYwSvkdPnrrclYtiscvIde<
                       l+++s+l+++e ++fP+GY+++R+YwS+ d++rrc+Y  +c+I e 
    KIAA0304  1439    SLGTLSDLSDCEGRLFPIGYQCSRLYWSTVDARRRCWY--RCRILE  1482 

                   -*
                     
    KIAA0304     -    -    

SM00542: domain 1 of 1, from 2113 to 2198: score 137.7, E = 1.2e-36
                   *->lFrvevesdpledeqFkgeSpekcWemvlerVqearkaadlqgLkss
                      ++r+e++s++  ++++++eS e++W++++e+Vqear +a+l      
    KIAA0304  2113    HLRFEISSED--GFSVEAESLEGAWRTLIEKVQEARGHARL------ 2151 

                   lqllpegvsidGeeMFGlsspavvkliEsLpgveqctnYwfrkygrspll
                   ++l+++g+s  G +++G++++av++l+E+Lpg+++c++Y+fr y+++ + 
    KIAA0304  2152 RHLSFSGMS--GARLLGIHHDAVIFLAEQLPGAQRCQHYKFR-YHQQGEG 2198 

                   <-*
                      
    KIAA0304     -     -    

SM00317: domain 1 of 1, from 2275 to 2397: score 156.4, E = 2.9e-42
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      + + v++s ++G+Gl+++++I +Ge+++ey+G +i++  ++++++  
    KIAA0304  2275    EAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIrsvltdkrekfy 2321 

                   ......fylfd.....ciDatranggkGniarfiNHSCePNcelifvevd
                   ++++ ++y+f+ ++ +++Dat+    +Gn arfiNHSCePNc  +++ v+
    KIAA0304  2322 dgkgigCYMFRmddfdVVDATM----HGNAARFINHSCEPNCFSRVIHVE 2367 

                   gfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   g           ++ivifAlr+I  GEELt+dY++  e++   
    KIAA0304  2368 G----------QKHIVIFALRRILRGEELTYDYKFPIEDA    2397 

SM00508: domain 1 of 1, from 2399 to 2415: score 29.0, E = 0.00067
                   *->kkqpClCGaanCrGfLg<-*
                      +k+pC+CGa++Cr+fL+   
    KIAA0304  2399    NKLPCNCGAKRCRRFLN    2415 

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