hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23073274/chunk_1/iprscan-20080501-23073274.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0304 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00856.18.ls SET domain 176.0 8.4e-50 1 PF00856.18.fs SET domain 174.6 2.3e-49 1 PF00628.19.fs PHD-finger 118.1 1.8e-37 4 PF05965.4.fs F/Y rich C-terminus 126.9 3.9e-37 1 PF05965.4.ls F/Y rich C-terminus 128.7 1.5e-35 1 PF02008.10.fs CXXC zinc finger 83.4 2.9e-33 1 PF00628.19.ls PHD-finger 115.1 1.8e-31 3 PF02008.10.ls CXXC zinc finger 85.3 1.7e-22 1 PF05964.4.fs F/Y-rich N-terminus 74.1 7.5e-21 1 PF05964.4.ls F/Y-rich N-terminus 76.0 1.1e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02178.9.ls 1/1 166 178 .. 1 13 [] 13.5 0.1 PF02008.10.fs 1/1 659 705 .. 1 49 [] 83.4 2.9e-33 PF02008.10.ls 1/1 659 705 .. 1 49 [] 85.3 1.7e-22 PF00628.19.fs 1/4 903 950 .. 1 49 [. 27.5 2e-08 PF00628.19.ls 1/3 903 952 .. 1 51 [] 34.8 2.8e-07 PF00628.19.fs 2/4 951 1003 .. 1 51 [] 39.1 4e-12 PF00628.19.ls 2/3 953 1003 .. 1 51 [] 29.1 1.4e-05 PF00628.19.fs 3/4 1037 1096 .. 1 51 [] 49.2 2.1e-15 PF00628.19.ls 3/3 1037 1096 .. 1 51 [] 51.2 3.1e-12 PF05964.4.ls 1/1 1432 1482 .. 1 55 [] 76.0 1.1e-19 PF05964.4.fs 1/1 1432 1482 .. 1 55 [] 74.1 7.5e-21 PF05965.4.fs 1/1 2111 2194 .. 1 96 [] 126.9 3.9e-37 PF05965.4.ls 1/1 2111 2194 .. 1 96 [] 128.7 1.5e-35 PF00856.18.ls 1/1 2269 2397 .. 1 259 [] 176.0 8.4e-50 PF00856.18.fs 1/1 2269 2397 .. 1 259 [] 174.6 2.3e-49 Alignments of top-scoring domains: PF02178.9.ls: domain 1 of 1, from 166 to 178: score 13.5, E = 0.1 *->kRkRGRPrKaata<-* RkRGRP+ ++++ KIAA0304 166 SRKRGRPPLTPSQ 178 PF02008.10.fs: domain 1 of 1, from 659 to 705: score 83.4, E = 2.9e-33 *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR +++r++r CG+C+gC+r +DCG C +CldkpkFGGp++kkQ +C++R KIAA0304 659 KKMRMAR-CGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQ-CCVYR 703 RC<-* +C KIAA0304 704 KC 705 PF02008.10.ls: domain 1 of 1, from 659 to 705: score 85.3, E = 1.7e-22 *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR +++r++r CG+C+gC+r +DCG C +CldkpkFGGp++kkQ +C++R KIAA0304 659 KKMRMAR-CGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQ-CCVYR 703 RC<-* +C KIAA0304 704 KC 705 PF00628.19.fs: domain 1 of 4, from 903 to 950: score 27.5, E = 2e-08 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C C +++ +l++C C++ fH++Cl+ ++p +++ ++W+C KIAA0304 903 VCLLCASKG---LHELVFCQVCCDPFHPFCLEEAERPLPQHHdtWCC 946 peCk<-* ++Ck KIAA0304 947 RRCK 950 PF00628.19.ls: domain 1 of 3, from 903 to 952: score 34.8, E = 2.8e-07 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C C +++ +l++C C++ fH++Cl+ ++p +++ ++W+C KIAA0304 903 VCLLCASKG---LHELVFCQVCCDPFHPFCLEEAERPLPQHHdtWCC 946 peCkpk<-* ++Ck++ KIAA0304 947 RRCKFC 952 PF00628.19.fs: domain 2 of 4, from 951 to 1003: score 39.1, E = 4e-12 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe...Wy +C vCg+++ + + ll C+ C +++H+aClgp+ + ++++W+ KIAA0304 951 FCHVCGRKGRG-SKHLLECERCRHAYHPACLGPSYPTRATRKrrhWI 996 CpeCkpk<-* C C+++ KIAA0304 997 CSACVRC 1003 PF00628.19.ls: domain 2 of 3, from 953 to 1003: score 29.1, E = 1.4e-05 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe...Wy vCg+++ + + ll C+ C +++H+aClgp+ + ++++W+ KIAA0304 953 --HVCGRKGRG-SKHLLECERCRHAYHPACLGPSYPTRATRKrrhWI 996 CpeCkpk<-* C C+++ KIAA0304 997 CSACVRC 1003 PF00628.19.fs: domain 3 of 4, from 1037 to 1096: score 49.2, E = 2.1e-15 *->yCsvCgkey..sdaggdllqCDgCdrwfHlaClgpplepeeipe... yC++C ++y+++d++ +++qC +Cd+w+H++C g+++e++ei+++ + KIAA0304 1037 YCPICTRCYedNDYESKMMQCAQCDHWVHAKCEGLSDEDYEILSglp 1083 ....WyCpeCkpk<-* ++ ++C C + KIAA0304 1084 dsvlYTCGPCAGA 1096 PF00628.19.ls: domain 3 of 3, from 1037 to 1096: score 51.2, E = 3.1e-12 *->yCsvCgkey..sdaggdllqCDgCdrwfHlaClgpplepeeipe... yC++C ++y+++d++ +++qC +Cd+w+H++C g+++e++ei+++ + KIAA0304 1037 YCPICTRCYedNDYESKMMQCAQCDHWVHAKCEGLSDEDYEILSglp 1083 ....WyCpeCkpk<-* ++ ++C C + KIAA0304 1084 dsvlYTCGPCAGA 1096 PF05964.4.ls: domain 1 of 1, from 1432 to 1482: score 76.0, E = 1.1e-19 *->igaltvvkLGvIvpdnsksfhnenaIyPiGYksrrkylSvldptnlt ig++ + +LG + s+++++e ++PiGY+++r+y+S+ d+++++ KIAA0304 1432 IGSIRIDSLGTL----SDLSDCEGRLFPIGYQCSRLYWSTVDARRRC 1474 lYtcevLd<-* +Y+c++L+ KIAA0304 1475 WYRCRILE 1482 PF05964.4.fs: domain 1 of 1, from 1432 to 1482: score 74.1, E = 7.5e-21 *->igaltvvkLGvIvpdnsksfhnenaIyPiGYksrrkylSvldptnlt ig++ + +LG + s+++++e ++PiGY+++r+y+S+ d+++++ KIAA0304 1432 IGSIRIDSLGTL----SDLSDCEGRLFPIGYQCSRLYWSTVDARRRC 1474 lYtcevLd<-* +Y+c++L+ KIAA0304 1475 WYRCRILE 1482 PF05965.4.fs: domain 1 of 1, from 2111 to 2194: score 126.9, E = 3.9e-37 *->slaPlFvicsedqgdpgevfkgvSasacWekilerVqearkkacasl ++++ F+i+sed g++++++S + +W++++e+Vqear +a +l KIAA0304 2111 GPHLRFEISSED----GFSVEAESLEGAWRTLIEKVQEARGHA--RL 2151 lplklgfpesisGedmFGLsapaVqkliEsLPGaesCtnYrtlkfryss< ++l +++++sG++++G++++aV++l+E+LPGa++C++Y kfry++ KIAA0304 2152 RHL---SFSGMSGARLLGIHHDAVIFLAEQLPGAQRCQHY---KFRYHQ 2194 -* KIAA0304 - - PF05965.4.ls: domain 1 of 1, from 2111 to 2194: score 128.7, E = 1.5e-35 *->slaPlFvicsedqgdpgevfkgvSasacWekilerVqearkkacasl ++++ F+i+sed g++++++S + +W++++e+Vqear +a +l KIAA0304 2111 GPHLRFEISSED----GFSVEAESLEGAWRTLIEKVQEARGHA--RL 2151 lplklgfpesisGedmFGLsapaVqkliEsLPGaesCtnYrtlkfryss< ++l +++++sG++++G++++aV++l+E+LPGa++C++Y kfry++ KIAA0304 2152 RHL---SFSGMSGARLLGIHHDAVIFLAEQLPGAQRCQHY---KFRYHQ 2194 -* KIAA0304 - - PF00856.18.ls: domain 1 of 1, from 2269 to 2397: score 176.0, E = 8.4e-50 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae k ++ + ++++ i+G+Gl+++++I +Ge++iEY G +i+s + KIAA0304 2269 LKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRSVLTD 2315 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy kre k+yd +g++ + Y+f+ d+ KIAA0304 2316 KRE------KFYDGKGIG-C--YMFRMDD--------------------- 2335 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee KIAA0304 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF +v+DAt++GN aRF KIAA0304 2336 -----------------------------------FDVVDATMHGNAARF 2350 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL iNHSCePNc+ +v+ v+ g ++iv+fAlr I GeEL KIAA0304 2351 INHSCEPNCFSRVIHVE--------------GQKHIVIFALRRILRGEEL 2386 tydYgydksnge<-* tydY+ ++ ++ KIAA0304 2387 TYDYK-FPIEDA 2397 PF00856.18.fs: domain 1 of 1, from 2269 to 2397: score 174.6, E = 2.3e-49 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae k ++ + ++++ i+G+Gl+++++I +Ge++iEY G +i+s + KIAA0304 2269 LKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRSVLTD 2315 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy kre k+yd +g++ + Y+f+ d+ KIAA0304 2316 KRE------KFYDGKGIG-C--YMFRMDD--------------------- 2335 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee KIAA0304 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF +v+DAt++GN aRF KIAA0304 2336 -----------------------------------FDVVDATMHGNAARF 2350 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL iNHSCePNc+ +v+ v+ g ++iv+fAlr I GeEL KIAA0304 2351 INHSCEPNCFSRVIHVE--------------GQKHIVIFALRRILRGEEL 2386 tydYgydksnge<-* tydY+ ++ ++ KIAA0304 2387 TYDYK-FPIEDA 2397 //