hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22533334/chunk_1/iprscan-20080501-22533334.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0297 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00706 293.6 1.4e-83 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00706 1/10 140 174 .. 1 43 [] 15.2 3.1 SM00706 2/10 176 213 .. 1 43 [] 20.2 0.29 SM00706 3/10 745 778 .. 1 43 [] 18.2 1.1 SM00706 4/10 786 821 .. 1 43 [] 28.1 0.0012 SM00706 5/10 832 870 .. 1 43 [] 38.5 9.1e-07 SM00706 6/10 1020 1055 .. 1 43 [] 28.0 0.0013 SM00706 7/10 1063 1102 .. 1 43 [] 44.6 1.3e-08 SM00706 8/10 1113 1155 .. 1 43 [] 40.2 2.8e-07 SM00706 9/10 1164 1198 .. 1 43 [] 31.3 0.00014 SM00706 10/10 1207 1241 .. 1 43 [] 29.3 0.00054 Alignments of top-scoring domains: SM00706: domain 1 of 10, from 140 to 174: score 15.2, E = 3.1 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavns.dgniyrRtg<-* +s+++ + +l vs+ +e W+++++ iy ++ KIAA0297 140 GSCSLPE---------RHLGLVSCFFQEGWVLSWnEYSIYLLDT 174 SM00706: domain 2 of 10, from 176 to 213: score 20.2, E = 0.29 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* ++ t+ ++++ +g +++vs++ +e++ + d+ni r + KIAA0297 176 NQATIAGLEG-----SGDIVSVSCTENEIFFLKGDRNIIRISS 213 SM00706: domain 3 of 10, from 745 to 778: score 18.2, E = 1.1 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* ++W++ + + v+ ++d+ W + + g++y tg KIAA0297 745 RHWYEAL---------PQAVFVALSDDTAWIIRTSGDLYLQTG 778 SM00706: domain 4 of 10, from 786 to 821: score 28.1, E = 0.0012 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* + ++v++p +l+q+++ +++VWa++ ++ +++R+g KIAA0297 786 ARAVKVDCP-------YPLSQITARNNVVWALTEQRALLYREG 821 SM00706: domain 5 of 10, from 832 to 870: score 38.5, E = 9.1e-07 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-* +++++v+++q + e ++++ g+++++Wa++ +gn+++Rtg KIAA0297 832 WKCDIVSERQ-----ALEPVCITLGDqQTLWALDIHGNLWFRTG 870 SM00706: domain 6 of 10, from 1020 to 1055: score 28.0, E = 0.0013 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* s +q+p+++ e++ ++++d++Wa++s g+++ Rt KIAA0297 1020 PSTVQLPPEA-------EMRAYAACQDALWALDSLGQVFIRTL 1055 SM00706: domain 7 of 10, from 1063 to 1102: score 44.6, E = 1.3e-08 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* ++Wt++++ q l++++l++ ++g++++Wa++s+g +y+R+g KIAA0297 1063 MHWTRLDLSQ---LGAVKLTSLACGNQHIWACDSRGGVYFRVG 1102 SM00706: domain 8 of 10, from 1113 to 1155: score 40.2, E = 2.8e-07 *->ssWtqvptpq.k.gslsggelkqvsvgp..deVWavnsdgniyrRtg +W+++++p+++ g ++l++v+ +p+++++W+++s++n+++Rtg KIAA0297 1113 PAWIMIEPPVqPaG----VSLVSVHSSPndQMLWVLDSRWNVHVRTG 1155 <-* KIAA0297 - - SM00706: domain 9 of 10, from 1164 to 1198: score 31.3, E = 0.00014 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* +W++vp g + +q + ++++VWa + +g++ rR+g KIAA0297 1164 TAWEHVP--------GLQACQLALSTRTVWARCPNGDLARRYG 1198 SM00706: domain 10 of 10, from 1207 to 1241: score 29.3, E = 0.00054 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-* + W ++p g++++ +v+++de+Wav+ g ++ R KIAA0297 1207 DYWKKIP---------GSVSCFTVTAsDELWAVGPPGYLLQRLT 1241 //