hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22533334/chunk_1/iprscan-20080501-22533334.nocrc
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Query sequence: KIAA0297
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06462.3.ls Propeller                                      260.5    3.2e-75   6
PF06462.3.fs Propeller                                      252.6    7.6e-73   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06462.3.fs   2/8     805   836 ..     1    34 []    41.6  2.3e-09
PF06462.3.ls   1/6     805   836 ..     1    34 []    43.5  6.7e-10
PF06462.3.ls   2/6     854   887 ..     1    34 []    43.1    9e-10
PF06462.3.fs   3/8     854   887 ..     1    34 []    41.1    3e-09
PF06462.3.ls   3/6    1039  1069 ..     1    34 []    43.2  8.4e-10
PF06462.3.fs   5/8    1039  1069 ..     1    34 []    41.3  2.7e-09
PF06462.3.ls   4/6    1086  1119 ..     1    34 []    43.6  6.2e-10
PF06462.3.fs   6/8    1086  1119 ..     1    34 []    41.6  2.2e-09
PF06462.3.fs   7/8    1139  1170 ..     1    34 []    41.3  2.7e-09
PF06462.3.ls   5/6    1139  1170 ..     1    34 []    43.2  8.1e-10
PF06462.3.ls   6/6    1182  1213 ..     1    34 []    43.9    5e-10
PF06462.3.fs   8/8    1182  1213 ..     1    34 []    42.0  1.8e-09

Alignments of top-scoring domains:
PF06462.3.fs: domain 2 of 8, from 805 to 836: score 41.6, E = 2.3e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                       +VWa+t  ++ +++R+GVs+ +P+G+  W++ +   
    KIAA0297   805    NVVWALT-EQRALLYREGVSSFCPEGEQ-WKCDI    836  

PF06462.3.ls: domain 1 of 6, from 805 to 836: score 43.5, E = 6.7e-10
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                       +VWa+t  ++ +++R+GVs+ +P+G+  W++ +   
    KIAA0297   805    NVVWALT-EQRALLYREGVSSFCPEGEQ-WKCDI    836  

PF06462.3.ls: domain 2 of 6, from 854 to 887: score 43.1, E = 9e-10
                   *->daVWaitasdGdifvRtGVsrsnPsGsd.aWehil<-*
                      +++Wa++  +G++++RtG+ ++ P+G+d++W+++    
    KIAA0297   854    QTLWALD-IHGNLWFRTGIISKKPQGDDdHWWQVS    887  

PF06462.3.fs: domain 3 of 8, from 854 to 887: score 41.1, E = 3e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsd.aWehil<-*
                      +++Wa++  +G++++RtG+ ++ P+G+d++W+++    
    KIAA0297   854    QTLWALD-IHGNLWFRTGIISKKPQGDDdHWWQVS    887  

PF06462.3.ls: domain 3 of 6, from 1039 to 1069: score 43.2, E = 8.4e-10
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                      da+Wa++ s G++f+R   s+s+P+G++ W++++   
    KIAA0297  1039    DALWALD-SLGQVFIR-TLSKSCPTGMH-WTRLD    1069 

PF06462.3.fs: domain 5 of 8, from 1039 to 1069: score 41.3, E = 2.7e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                      da+Wa++ s G++f+R   s+s+P+G++ W++++   
    KIAA0297  1039    DALWALD-SLGQVFIR-TLSKSCPTGMH-WTRLD    1069 

PF06462.3.ls: domain 4 of 6, from 1086 to 1119: score 43.6, E = 6.2e-10
                   *->daVWaitasdGdifvRtGVsrsnPsGsd.aWehil<-*
                      +++Wa++ s+G +++R+G ++ nPs++ +aW++i+   
    KIAA0297  1086    QHIWACD-SRGGVYFRVGTQPLNPSLMLpAWIMIE    1119 

PF06462.3.fs: domain 6 of 8, from 1086 to 1119: score 41.6, E = 2.2e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsd.aWehil<-*
                      +++Wa++ s+G +++R+G ++ nPs++ +aW++i+   
    KIAA0297  1086    QHIWACD-SRGGVYFRVGTQPLNPSLMLpAWIMIE    1119 

PF06462.3.fs: domain 7 of 8, from 1139 to 1170: score 41.3, E = 2.7e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                      + +W+++ s+ ++ vRtG++++ P G++ Weh++   
    KIAA0297  1139    QMLWVLD-SRWNVHVRTGITEEMPVGTA-WEHVP    1170 

PF06462.3.ls: domain 5 of 6, from 1139 to 1170: score 43.2, E = 8.1e-10
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                      + +W+++ s+ ++ vRtG++++ P G++ Weh++   
    KIAA0297  1139    QMLWVLD-SRWNVHVRTGITEEMPVGTA-WEHVP    1170 

PF06462.3.ls: domain 6 of 6, from 1182 to 1213: score 43.9, E = 5e-10
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                       +VWa +  +Gd+++R+GV+ +nP+G++ W+ i+   
    KIAA0297  1182    RTVWARC-PNGDLARRYGVTDKNPAGDY-WKKIP    1213 

PF06462.3.fs: domain 8 of 8, from 1182 to 1213: score 42.0, E = 1.8e-09
                   *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-*
                       +VWa +  +Gd+++R+GV+ +nP+G++ W+ i+   
    KIAA0297  1182    RTVWARC-PNGDLARRYGVTDKNPAGDY-WKKIP    1213 

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