# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hf00325.fasta.huge -Q ../query/KIAA0297.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0297, 1271 aa vs ./tmplib.23147 library 1986234 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.3573+/-0.00648; mu= 10.9230+/- 0.441 mean_var=160.7090+/-36.864, 0's: 0 Z-trim: 4 B-trim: 3 in 1/39 Lambda= 0.101171 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0329 ( 1417 res) hg00872 (1417) 8656 1276.7 0 KIAA1017 ( 1095 res) hk07512s1 (1095) 289 55.3 6.2e-08 KIAA1358 ( 1123 res) fj02029 (1123) 242 48.5 7.4e-06 >>KIAA0329 ( 1417 res) hg00872 (1417 aa) initn: 8656 init1: 8656 opt: 8656 Z-score: 6833.1 bits: 1276.7 E(): 0 Smith-Waterman score: 8656; 100.000% identity (100.000% similar) in 1271 aa overlap (1-1271:147-1417) 10 20 30 KIAA02 KLFSGDDKGKIVYSSLDLDQGLCNSQLVLE :::::::::::::::::::::::::::::: KIAA03 PGRNKQLRRFDVTGIHKNSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGLCNSQLVLE 120 130 140 150 160 170 40 50 60 70 80 90 KIAA02 EPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 EPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSD 180 190 200 210 220 230 100 110 120 130 140 150 KIAA02 LTLYASRPGLRLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 LTLYASRPGLRLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLG 240 250 260 270 280 290 160 170 180 190 200 210 KIAA02 LVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 LVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIR 300 310 320 330 340 350 220 230 240 250 260 270 KIAA02 ISSRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 ISSRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRS 360 370 380 390 400 410 280 290 300 310 320 330 KIAA02 SSLNSTDSGSGLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 SSLNSTDSGSGLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKK 420 430 440 450 460 470 340 350 360 370 380 390 KIAA02 KTEGGSRSTCHSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 KTEGGSRSTCHSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSF 480 490 500 510 520 530 400 410 420 430 440 450 KIAA02 NGEVNGVPQENTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 NGEVNGVPQENTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVG 540 550 560 570 580 590 460 470 480 490 500 510 KIAA02 GSDVTGLGDEPCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 GSDVTGLGDEPCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTV 600 610 620 630 640 650 520 530 540 550 560 570 KIAA02 PSSLSWAPSAEQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 PSSLSWAPSAEQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKE 660 670 680 690 700 710 580 590 600 610 620 630 KIAA02 IPISERVLGSVGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 IPISERVLGSVGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETS 720 730 740 750 760 770 640 650 660 670 680 690 KIAA02 VTELGPSCSQQDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 VTELGPSCSQQDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKG 780 790 800 810 820 830 700 710 720 730 740 750 KIAA02 GLFCSALPGAGLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 GLFCSALPGAGLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEA 840 850 860 870 880 890 760 770 780 790 800 810 KIAA02 LPQAVFVALSDDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 LPQAVFVALSDDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWAL 900 910 920 930 940 950 820 830 840 850 860 870 KIAA02 TEQRALLYREGVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 TEQRALLYREGVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTG 960 970 980 990 1000 1010 880 890 900 910 920 930 KIAA02 IISKKPQGDDDHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 IISKKPQGDDDHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFW 1020 1030 1040 1050 1060 1070 940 950 960 970 980 990 KIAA02 SQQLQCQPSLLGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 SQQLQCQPSLLGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASA 1080 1090 1100 1110 1120 1130 1000 1010 1020 1030 1040 1050 KIAA02 APTKEGSFLWLCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 APTKEGSFLWLCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQV 1140 1150 1160 1170 1180 1190 1060 1070 1080 1090 1100 1110 KIAA02 FIRTLSKSCPTGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 FIRTLSKSCPTGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSL 1200 1210 1220 1230 1240 1250 1120 1130 1140 1150 1160 1170 KIAA02 MLPAWIMIEPPVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 MLPAWIMIEPPVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVP 1260 1270 1280 1290 1300 1310 1180 1190 1200 1210 1220 1230 KIAA02 GLQACQLALSTRTVWARCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA03 GLQACQLALSTRTVWARCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAV 1320 1330 1340 1350 1360 1370 1240 1250 1260 1270 KIAA02 GPPGYLLQRLTKTFSHSHGTQKSSQAAMPHPEDLEDEWEVI ::::::::::::::::::::::::::::::::::::::::: KIAA03 GPPGYLLQRLTKTFSHSHGTQKSSQAAMPHPEDLEDEWEVI 1380 1390 1400 1410 >>KIAA1017 ( 1095 res) hk07512s1 (1095 aa) initn: 129 init1: 94 opt: 289 Z-score: 234.3 bits: 55.3 E(): 6.2e-08 Smith-Waterman score: 289; 30.000% identity (57.083% similar) in 240 aa overlap (1-226:103-335) 10 20 KIAA02 KLFSGDDKGKIVYSSLDLDQG--------L ..: :: ::. .:. .. . KIAA10 ERRGKPEQMYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVM 80 90 100 110 120 130 30 40 50 60 70 80 KIAA02 CNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFI : . : .::::: . ::.:.: ::.: ::... .::.. : :..::::. KIAA10 FPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKER--DGEYGACFF 140 150 160 170 180 190 90 100 110 120 130 KIAA02 PGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPN :: :. .. : : .::: :.:... : : .: .: .. : .. .:. . KIAA10 PGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTA 200 210 220 230 240 250 140 150 160 170 180 190 KIAA02 SGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENE ..: :: .: .: : ::.:.: .::.. : .. : . :: .:. .:: KIAA10 GSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQVLLWSEVK-DIQDVAVCRNE 260 270 280 290 300 200 210 220 230 240 250 KIAA02 IFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGS .: :. . .. ..: : . . .: :: KIAA10 LFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLE 310 320 330 340 350 360 >>KIAA1358 ( 1123 res) fj02029 (1123 aa) initn: 323 init1: 113 opt: 242 Z-score: 197.1 bits: 48.5 E(): 7.4e-06 Smith-Waterman score: 270; 30.055% identity (56.831% similar) in 183 aa overlap (1040-1218:168-339) 1010 1020 1030 1040 1050 1060 KIAA02 SVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRT-LSKSCPTGMHWTRL ..::.. :.:. : .:.: : : :. : KIAA13 SKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLL 140 150 160 170 180 190 1070 1080 1090 1100 1110 1120 KIAA02 DLSQLGAVKLTSLACGNQHI-WACDSRGGVYFRVGTQPLNPSLMLPAWIMIEPPVQPAGV : : : ....:: . . :: .: . : : . ::. .: ..::: . :: KIAA13 DTP--GEV--VQISCGPHDLLWATLWEGQALVREGINRSNPKG--SSWSIVEPPGSENGV 200 210 220 230 240 250 1130 1140 1150 1160 1170 1180 KIAA02 SLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAW-EHVPGLQACQLALSTRTVWA .:: : ..:.. . :.: : :.. . : ::.: : : . ..... . ::. KIAA13 MHISVGVS----VVWAVTKDWKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGMNDQ-VWG 260 270 280 290 300 1190 1200 1210 1220 1230 1240 KIAA02 -RCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAVGPPGYLLQRLTKTFS : . . : ::: .. .: :: : .. : KIAA13 IGCEDRAVYFRQGVTPSELSGKTWKAIIAARECDRSHSGSSSSLLSAGCFFGDEVRGSGE 310 320 330 340 350 360 1250 1260 1270 KIAA02 HSHGTQKSSQAAMPHPEDLEDEWEVI KIAA13 SAPSDTDASSEVERPGPGQILPAEPLDDSKNATGNSASGLGAGRTAEDTVEDACPAEGSR 370 380 390 400 410 420 1271 residues in 1 query sequences 1986234 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:06 2008 done: Thu Dec 18 15:15:07 2008 Total Scan time: 0.770 Total Display time: 0.160 Function used was FASTA [version 34.26.5 April 26, 2007]