hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22514762/chunk_1/iprscan-20080501-22514762.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0296 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 741.0 3.1e-218 32 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/32 17 40 .. 1 23 [] 21.8 0.094 SM00355 2/32 57 79 .. 1 23 [] 28.0 0.0013 SM00355 3/32 84 106 .. 1 23 [] 30.9 0.00018 SM00355 4/32 248 270 .. 1 23 [] 29.6 0.00043 SM00355 5/32 275 297 .. 1 23 [] 22.5 0.06 SM00355 6/32 303 325 .. 1 23 [] 27.5 0.0019 SM00355 7/32 383 405 .. 1 23 [] 25.7 0.0065 SM00355 8/32 410 432 .. 1 23 [] 24.0 0.022 SM00355 9/32 474 496 .. 1 23 [] 25.8 0.0062 SM00355 10/32 501 523 .. 1 23 [] 29.2 0.00057 SM00355 11/32 584 606 .. 1 23 [] 17.4 2.1 SM00355 12/32 626 648 .. 1 23 [] 25.0 0.011 SM00355 13/32 653 675 .. 1 23 [] 21.3 0.14 SM00355 14/32 830 852 .. 1 23 [] 16.7 3.3 SM00355 15/32 857 879 .. 1 23 [] 28.4 0.001 SM00355 16/32 890 913 .. 1 23 [] 18.2 1.1 SM00355 17/32 967 987 .. 1 23 [] 4.1 1.1e+02 SM00355 18/32 1061 1083 .. 1 23 [] 27.0 0.0026 SM00355 19/32 1088 1110 .. 1 23 [] 24.0 0.02 SM00355 20/32 1212 1234 .. 1 23 [] 27.3 0.0021 SM00355 21/32 1239 1261 .. 1 23 [] 22.4 0.062 SM00355 22/32 1267 1289 .. 1 23 [] 29.3 0.00053 SM00355 23/32 1308 1330 .. 1 23 [] 26.5 0.0038 SM00355 24/32 1335 1357 .. 1 23 [] 29.1 0.0006 SM00355 25/32 1373 1395 .. 1 23 [] 27.5 0.0019 SM00355 26/32 1540 1560 .. 1 23 [] 2.6 1.6e+02 SM00355 27/32 1566 1588 .. 1 23 [] 7.4 46 SM00355 28/32 1594 1616 .. 1 23 [] 27.8 0.0015 SM00355 29/32 1686 1708 .. 1 23 [] 27.1 0.0024 SM00355 30/32 1713 1735 .. 1 23 [] 22.8 0.049 SM00355 31/32 1741 1763 .. 1 23 [] 19.2 0.58 SM00355 32/32 1770 1792 .. 1 23 [] 25.1 0.0095 Alignments of top-scoring domains: SM00355: domain 1 of 32, from 17 to 40: score 21.8, E = 0.094 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C+ C+++f+s ++L rH H KIAA0296 17 LSCSD-CQRHFPSLpELSRHRElLH 40 SM00355: domain 2 of 32, from 57 to 79: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+ ++++++L++H r+H KIAA0296 57 YRCQQ-CGRGYRHPgSLVNHRRTH 79 SM00355: domain 3 of 32, from 84 to 106: score 30.9, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+ Cgk fs++ aLk Hmr+H KIAA0296 84 FPCTT-CGKDFSNPmALKSHMRTH 106 SM00355: domain 4 of 32, from 248 to 270: score 29.6, E = 0.00043 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+++++++L++H ++H KIAA0296 248 YKCSQ-CGKTYKHAgSLTNHRQSH 270 SM00355: domain 5 of 32, from 275 to 297: score 22.5, E = 0.06 *->ykCpigCgksfssk.aLkrHmrvH<-* y C i C k fs+ aLk+H r H KIAA0296 275 YPCAI-CFKEFSNLmALKNHSRLH 297 SM00355: domain 6 of 32, from 303 to 325: score 27.5, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* y+Cp+ C+++f+ +++L +H+++H KIAA0296 303 YHCPH-CPRVFRLPrELLEHQQSH 325 SM00355: domain 7 of 32, from 383 to 405: score 25.7, E = 0.0065 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C Cg++++++++L++H ++H KIAA0296 383 FRCGD-CGRTYRHAgSLINHRKSH 405 SM00355: domain 8 of 32, from 410 to 432: score 24.0, E = 0.022 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+k+ ++ aLk+H+r H KIAA0296 410 YPCSL-CSKQLFNAaALKNHVRAH 432 SM00355: domain 9 of 32, from 474 to 496: score 25.8, E = 0.0062 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg+ ++++++L++H +H KIAA0296 474 YKCSE-CGRAYRHRgSLVNHRHSH 496 SM00355: domain 10 of 32, from 501 to 523: score 29.2, E = 0.00057 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C++++++ aL++H+rvH KIAA0296 501 YQCSL-CPRKYPNLmALRNHVRVH 523 SM00355: domain 11 of 32, from 584 to 606: score 17.4, E = 2.1 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+i Cg f ++++L+rH +H KIAA0296 584 HICSI-CGLLFEDAeSLERHGLTH 606 SM00355: domain 12 of 32, from 626 to 648: score 25.0, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* + C Cgks+++ ++L++H ++H KIAA0296 626 FACRD-CGKSYRHSgSLINHRQTH 648 SM00355: domain 13 of 32, from 653 to 675: score 21.3, E = 0.14 *->ykCpigCgksfssk.aLkrHmrvH<-* + C C k+f++ a+k+H+r+H KIAA0296 653 FSCGA-CAKHFHTMaAMKNHLRRH 675 SM00355: domain 14 of 32, from 830 to 852: score 16.7, E = 3.3 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ Cg sf++++ L H H KIAA0296 830 HTCSD-CGHSFPHAtGLLSHRPCH 852 SM00355: domain 15 of 32, from 857 to 879: score 28.4, E = 0.001 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+k f s +aL+ H + H KIAA0296 857 YQCSL-CPKEFDSLpALRSHFQNH 879 SM00355: domain 16 of 32, from 890 to 913: score 18.2, E = 1.1 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C + Cg+ f+ + ++ H r+ H KIAA0296 890 FLCCL-CGMIFPGRaGYRLHRRqAH 913 SM00355: domain 17 of 32, from 967 to 987: score 4.1, E = 1.1e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* + C Cg+++ + ++L+rH + KIAA0296 967 HICGC-CGQTYDDLgSLERHHQ-- 987 SM00355: domain 18 of 32, from 1061 to 1083: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk++++ ++L++H ++H KIAA0296 1061 FRCNQ-CGKTYRHGgSLVNHRKIH 1083 SM00355: domain 19 of 32, from 1088 to 1110: score 24.0, E = 0.02 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C++++++ a+++H+r H KIAA0296 1088 FLCPV-CSRCYPNLaAYRNHLRNH 1110 SM00355: domain 20 of 32, from 1212 to 1234: score 27.3, E = 0.0021 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg+s++++++L++H ++H KIAA0296 1212 FSCEV-CGRSYKHAgSLINHRQSH 1234 SM00355: domain 21 of 32, from 1239 to 1261: score 22.4, E = 0.062 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+ C+k fs+ +Lk+H r+H KIAA0296 1239 FGCQA-CSKGFSNLmSLKNHRRIH 1261 SM00355: domain 22 of 32, from 1267 to 1289: score 29.3, E = 0.00053 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f+ +++L H+rvH KIAA0296 1267 FRCSE-CGKAFRLRkQLASHQRVH 1289 SM00355: domain 23 of 32, from 1308 to 1330: score 26.5, E = 0.0038 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cg++++++++L +H r+H KIAA0296 1308 FRCGQ-CGRTYRHAgSLLNHRRSH 1330 SM00355: domain 24 of 32, from 1335 to 1357: score 29.1, E = 0.0006 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cp C+k++s++ aLk H+r H KIAA0296 1335 YSCPT-CPKTYSNRmALKDHQRLH 1357 SM00355: domain 25 of 32, from 1373 to 1395: score 27.5, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* +C + Cg+sf+ +++L+rH+r H KIAA0296 1373 VRCAL-CGRSFPGRgSLERHLREH 1395 SM00355: domain 26 of 32, from 1540 to 1560: score 2.6, E = 1.6e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* C++ Cgk++++ ++L +H KIAA0296 1540 SSCSQ-CGKTYCQSgSLLNHNT-- 1560 SM00355: domain 27 of 32, from 1566 to 1588: score 7.4, E = 46 *->ykCpigCgksfssk.aLkrHmrvH<-* + C + C+k f ++ a k H H KIAA0296 1566 HYCLL-CSKEFLNPvATKSHSHNH 1588 SM00355: domain 28 of 32, from 1594 to 1616: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp Cgk f s+++L H++ H KIAA0296 1594 FACPD-CGKAFESHqELASHLQAH 1616 SM00355: domain 29 of 32, from 1686 to 1708: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg+s++++++L +H++ H KIAA0296 1686 FRCTQ-CGRSYRHAgSLLNHQKAH 1708 SM00355: domain 30 of 32, from 1713 to 1735: score 22.8, E = 0.049 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+k ++ +Lk+H r+H KIAA0296 1713 YPCSL-CPKLLPNLlSLKNHSRTH 1735 SM00355: domain 31 of 32, from 1741 to 1763: score 19.2, E = 0.58 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+i Cgk f+++ L+ H rvH KIAA0296 1741 HCCSI-CGKAFRTAaRLEGHGRVH 1763 SM00355: domain 32 of 32, from 1770 to 1792: score 25.1, E = 0.0095 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C+++f+++ ++++H+++H KIAA0296 1770 FTCPH-CPRHFRRRiSFVQHQQQH 1792 //