hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22514762/chunk_1/iprscan-20080501-22514762.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0296 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 757.8 6.3e-225 32 PF00096.16.fs Zinc finger, C2H2 type 718.6 4e-213 32 PF01096.9.fs Transcription factor S-II (TFIIS) 33.9 8.5e-10 11 PF08790.1.fs LYAR-type C2HC zinc finger 31.7 2.1e-08 9 PF07754.2.fs Domain of unknown function (DUF1610) 25.4 8.6e-06 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/32 17 40 .. 1 24 [] 19.5 0.011 PF00096.16.fs 2/32 57 79 .. 1 24 [] 29.5 4.3e-06 PF00096.16.ls 2/32 57 79 .. 1 24 [] 31.4 2.9e-06 PF00096.16.fs 3/32 84 106 .. 1 24 [] 32.1 9.5e-07 PF00096.16.ls 3/32 84 106 .. 1 24 [] 34.1 4.6e-07 PF00096.16.ls 4/32 248 270 .. 1 24 [] 31.2 3.3e-06 PF00096.16.fs 4/32 248 270 .. 1 24 [] 29.3 4.8e-06 PF00096.16.fs 5/32 275 297 .. 1 24 [] 23.7 0.00012 PF00096.16.ls 5/32 275 297 .. 1 24 [] 25.7 0.00015 PF00096.16.ls 6/32 303 325 .. 1 24 [] 26.4 9.2e-05 PF00096.16.fs 6/32 303 325 .. 1 24 [] 24.5 7.6e-05 PF00096.16.fs 7/32 383 405 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 7/32 383 405 .. 1 24 [] 31.5 2.7e-06 PF00096.16.ls 8/32 410 432 .. 1 24 [] 20.8 0.0046 PF00096.16.ls 9/32 474 496 .. 1 24 [] 28.1 2.8e-05 PF00096.16.fs 9/32 474 496 .. 1 24 [] 26.2 2.8e-05 PF00096.16.fs 10/32 501 523 .. 1 24 [] 23.8 0.00011 PF00096.16.ls 10/32 501 523 .. 1 24 [] 25.7 0.00015 PF00096.16.ls 11/32 584 606 .. 1 24 [] 23.4 0.00075 PF00096.16.ls 12/32 626 648 .. 1 24 [] 30.9 4.3e-06 PF00096.16.fs 12/32 626 648 .. 1 24 [] 28.9 6e-06 PF00096.16.ls 15/32 857 879 .. 1 24 [] 22.3 0.0017 PF00096.16.fs 18/32 1061 1083 .. 1 24 [] 27.0 1.7e-05 PF00096.16.ls 18/32 1061 1083 .. 1 24 [] 29.0 1.5e-05 PF00096.16.ls 19/32 1088 1110 .. 1 24 [] 22.1 0.0018 PF00096.16.ls 20/32 1212 1234 .. 1 24 [] 29.9 8.5e-06 PF00096.16.fs 20/32 1212 1234 .. 1 24 [] 27.9 1.1e-05 PF00096.16.ls 21/32 1239 1261 .. 1 24 [] 24.0 0.00048 PF00096.16.fs 22/32 1267 1289 .. 1 24 [] 30.7 2.1e-06 PF00096.16.ls 22/32 1267 1289 .. 1 24 [] 32.7 1.2e-06 PF00096.16.ls 23/32 1308 1330 .. 1 24 [] 29.9 8.5e-06 PF00096.16.fs 23/32 1308 1330 .. 1 24 [] 27.9 1.1e-05 PF00096.16.ls 24/32 1335 1357 .. 1 24 [] 31.0 3.8e-06 PF00096.16.fs 24/32 1335 1357 .. 1 24 [] 29.1 5.4e-06 PF00096.16.ls 25/32 1373 1395 .. 1 24 [] 25.0 0.00025 PF00096.16.fs 25/32 1373 1395 .. 1 24 [] 23.0 0.00018 PF00096.16.ls 28/32 1594 1616 .. 1 24 [] 30.0 7.8e-06 PF00096.16.fs 28/32 1594 1616 .. 1 24 [] 28.0 9.8e-06 PF00096.16.fs 29/32 1686 1708 .. 1 24 [] 28.2 8.8e-06 PF00096.16.ls 29/32 1686 1708 .. 1 24 [] 30.2 6.8e-06 PF00096.16.ls 30/32 1713 1735 .. 1 24 [] 18.4 0.024 PF00096.16.ls 31/32 1741 1763 .. 1 24 [] 24.0 0.0005 PF00096.16.ls 32/32 1770 1792 .. 1 24 [] 23.6 0.00067 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 32, from 17 to 40: score 19.5, E = 0.011 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ dC++ F + +L rH+ H KIAA0296 17 LSCS-DCQRHFPSLPELSRHRELlH 40 PF00096.16.fs: domain 2 of 32, from 57 to 79: score 29.5, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ ++++++L +H+rtH KIAA0296 57 YRCQ-QCGRGYRHPGSLVNHRRTH 79 PF00096.16.ls: domain 2 of 32, from 57 to 79: score 31.4, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ ++++++L +H+rtH KIAA0296 57 YRCQ-QCGRGYRHPGSLVNHRRTH 79 PF00096.16.fs: domain 3 of 32, from 84 to 106: score 32.1, E = 9.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ Cgk Fs++ Lk+H+rtH KIAA0296 84 FPCT-TCGKDFSNPMALKSHMRTH 106 PF00096.16.ls: domain 3 of 32, from 84 to 106: score 34.1, E = 4.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ Cgk Fs++ Lk+H+rtH KIAA0296 84 FPCT-TCGKDFSNPMALKSHMRTH 106 PF00096.16.ls: domain 4 of 32, from 248 to 270: score 31.2, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk++++ ++L++H+++H KIAA0296 248 YKCS-QCGKTYKHAGSLTNHRQSH 270 PF00096.16.fs: domain 4 of 32, from 248 to 270: score 29.3, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk++++ ++L++H+++H KIAA0296 248 YKCS-QCGKTYKHAGSLTNHRQSH 270 PF00096.16.fs: domain 5 of 32, from 275 to 297: score 23.7, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C +C k Fs+ Lk+H r H KIAA0296 275 YPCA-ICFKEFSNLMALKNHSRLH 297 PF00096.16.ls: domain 5 of 32, from 275 to 297: score 25.7, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C +C k Fs+ Lk+H r H KIAA0296 275 YPCA-ICFKEFSNLMALKNHSRLH 297 PF00096.16.ls: domain 6 of 32, from 303 to 325: score 26.4, E = 9.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +C ++F+ + +L H+++H KIAA0296 303 YHCP-HCPRVFRLPRELLEHQQSH 325 PF00096.16.fs: domain 6 of 32, from 303 to 325: score 24.5, E = 7.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +C ++F+ + +L H+++H KIAA0296 303 YHCP-HCPRVFRLPRELLEHQQSH 325 PF00096.16.fs: domain 7 of 32, from 383 to 405: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C dCg+++++ ++L +H+++H KIAA0296 383 FRCG-DCGRTYRHAGSLINHRKSH 405 PF00096.16.ls: domain 7 of 32, from 383 to 405: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C dCg+++++ ++L +H+++H KIAA0296 383 FRCG-DCGRTYRHAGSLINHRKSH 405 PF00096.16.ls: domain 8 of 32, from 410 to 432: score 20.8, E = 0.0046 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C k + + Lk+H r H KIAA0296 410 YPCS-LCSKQLFNAAALKNHVRAH 432 PF00096.16.ls: domain 9 of 32, from 474 to 496: score 28.1, E = 2.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++++++++L +H+ +H KIAA0296 474 YKCS-ECGRAYRHRGSLVNHRHSH 496 PF00096.16.fs: domain 9 of 32, from 474 to 496: score 26.2, E = 2.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++++++++L +H+ +H KIAA0296 474 YKCS-ECGRAYRHRGSLVNHRHSH 496 PF00096.16.fs: domain 10 of 32, from 501 to 523: score 23.8, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C +++ + L++H r+H KIAA0296 501 YQCS-LCPRKYPNLMALRNHVRVH 523 PF00096.16.ls: domain 10 of 32, from 501 to 523: score 25.7, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C +++ + L++H r+H KIAA0296 501 YQCS-LCPRKYPNLMALRNHVRVH 523 PF00096.16.ls: domain 11 of 32, from 584 to 606: score 23.4, E = 0.00075 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg F + ++L+rH tH KIAA0296 584 HICS-ICGLLFEDAESLERHGLTH 606 PF00096.16.ls: domain 12 of 32, from 626 to 648: score 30.9, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C dCgks++++++L +H++tH KIAA0296 626 FACR-DCGKSYRHSGSLINHRQTH 648 PF00096.16.fs: domain 12 of 32, from 626 to 648: score 28.9, E = 6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C dCgks++++++L +H++tH KIAA0296 626 FACR-DCGKSYRHSGSLINHRQTH 648 PF00096.16.ls: domain 15 of 32, from 857 to 879: score 22.3, E = 0.0017 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k F + L++H + H KIAA0296 857 YQCS-LCPKEFDSLPALRSHFQNH 879 PF00096.16.fs: domain 18 of 32, from 1061 to 1083: score 27.0, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk++++ ++L +H+++H KIAA0296 1061 FRCN-QCGKTYRHGGSLVNHRKIH 1083 PF00096.16.ls: domain 18 of 32, from 1061 to 1083: score 29.0, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk++++ ++L +H+++H KIAA0296 1061 FRCN-QCGKTYRHGGSLVNHRKIH 1083 PF00096.16.ls: domain 19 of 32, from 1088 to 1110: score 22.1, E = 0.0018 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp +C +++ + + +++Hlr H KIAA0296 1088 FLCP-VCSRCYPNLAAYRNHLRNH 1110 PF00096.16.ls: domain 20 of 32, from 1212 to 1234: score 29.9, E = 8.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg+s+++ ++L +H+++H KIAA0296 1212 FSCE-VCGRSYKHAGSLINHRQSH 1234 PF00096.16.fs: domain 20 of 32, from 1212 to 1234: score 27.9, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg+s+++ ++L +H+++H KIAA0296 1212 FSCE-VCGRSYKHAGSLINHRQSH 1234 PF00096.16.ls: domain 21 of 32, from 1239 to 1261: score 24.0, E = 0.00048 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ C k Fs+ +Lk+H+r+H KIAA0296 1239 FGCQ-ACSKGFSNLMSLKNHRRIH 1261 PF00096.16.fs: domain 22 of 32, from 1267 to 1289: score 30.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+ +++L +H+r+H KIAA0296 1267 FRCS-ECGKAFRLRKQLASHQRVH 1289 PF00096.16.ls: domain 22 of 32, from 1267 to 1289: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+ +++L +H+r+H KIAA0296 1267 FRCS-ECGKAFRLRKQLASHQRVH 1289 PF00096.16.ls: domain 23 of 32, from 1308 to 1330: score 29.9, E = 8.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+++++ ++L +H+r+H KIAA0296 1308 FRCG-QCGRTYRHAGSLLNHRRSH 1330 PF00096.16.fs: domain 23 of 32, from 1308 to 1330: score 27.9, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+++++ ++L +H+r+H KIAA0296 1308 FRCG-QCGRTYRHAGSLLNHRRSH 1330 PF00096.16.ls: domain 24 of 32, from 1335 to 1357: score 31.0, E = 3.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp C k++s++ Lk H+r H KIAA0296 1335 YSCP-TCPKTYSNRMALKDHQRLH 1357 PF00096.16.fs: domain 24 of 32, from 1335 to 1357: score 29.1, E = 5.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp C k++s++ Lk H+r H KIAA0296 1335 YSCP-TCPKTYSNRMALKDHQRLH 1357 PF00096.16.ls: domain 25 of 32, from 1373 to 1395: score 25.0, E = 0.00025 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C Cg+sF +++L+rHlr H KIAA0296 1373 VRCA-LCGRSFPGRGSLERHLREH 1395 PF00096.16.fs: domain 25 of 32, from 1373 to 1395: score 23.0, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C Cg+sF +++L+rHlr H KIAA0296 1373 VRCA-LCGRSFPGRGSLERHLREH 1395 PF00096.16.ls: domain 28 of 32, from 1594 to 1616: score 30.0, E = 7.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp dCgk+F ++ +L +Hl+ H KIAA0296 1594 FACP-DCGKAFESHQELASHLQAH 1616 PF00096.16.fs: domain 28 of 32, from 1594 to 1616: score 28.0, E = 9.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp dCgk+F ++ +L +Hl+ H KIAA0296 1594 FACP-DCGKAFESHQELASHLQAH 1616 PF00096.16.fs: domain 29 of 32, from 1686 to 1708: score 28.2, E = 8.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg+s+++ ++L +H++ H KIAA0296 1686 FRCT-QCGRSYRHAGSLLNHQKAH 1708 PF00096.16.ls: domain 29 of 32, from 1686 to 1708: score 30.2, E = 6.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg+s+++ ++L +H++ H KIAA0296 1686 FRCT-QCGRSYRHAGSLLNHQKAH 1708 PF00096.16.ls: domain 30 of 32, from 1713 to 1735: score 18.4, E = 0.024 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C k + +Lk+H rtH KIAA0296 1713 YPCS-LCPKLLPNLLSLKNHSRTH 1735 PF00096.16.ls: domain 31 of 32, from 1741 to 1763: score 24.0, E = 0.0005 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F++ + L+ H r+H KIAA0296 1741 HCCS-ICGKAFRTAARLEGHGRVH 1763 PF00096.16.ls: domain 32 of 32, from 1770 to 1792: score 23.6, E = 0.00067 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C + F+r+ ++ +H++ H KIAA0296 1770 FTCP-HCPRHFRRRISFVQHQQQH 1792 //