# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha06644.fasta.huge -Q ../query/KIAA0290.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0290, 906 aa
 vs ./tmplib.23147 library

1986599 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 14.2705+/-0.0111; mu= -30.4575+/- 0.745
 mean_var=575.1150+/-137.578, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.053481

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0394  ( 417 res)   hf00236                     ( 417)  299 38.1  0.0025


>>KIAA0394  ( 417 res)   hf00236                          (417 aa)
 initn: 166 init1: 166 opt: 299  Z-score: 151.5  bits: 38.1 E(): 0.0025
Smith-Waterman score: 299;  26.644% identity (57.785% similar) in 289 aa overlap (21-286:141-416)

                         10        20        30                40  
KIAA02           LDRHWTGPAGVSTETIRMSYFGEHFWGEKNH--------GFEVLYHSVKQ
                                     . ..::..:.         :::.: ..  .
KIAA03 KENTITINCVTFPHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLK
              120       130       140       150       160       170

             50        60        70        80        90       100  
KIAA02 GPISTKELADFIRERATIEETYSKAMAKLSKLASNGTPMGTFAPLWEVFRVSSDKLALCH
       :    ::...:::::  ::: :.: .::::. .  .   :...  :   . :    :  :
KIAA03 GKQMQKEMSEFIRERIKIEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVH
              180       190       200       210       220       230

            110        120       130       140       150       160 
KIAA02 LELTRKLQDLI-KDVLRYGEEQLKTHKKCKEEVVSTLDAVQVLSGVSQLLPKSRENYLNR
       :... ::.. . : .. . :.  :  ::: ....   :  . :..    . :.:.   .:
KIAA03 LKFSAKLHSEVEKPLMNFRENFKKDMKKCDHHIA---DLRKQLASRYASVEKARKALTER
              240       250       260          270       280       

                   170       180       190       200       210     
KIAA02 CMDQE------RLRRESTSQKEMDKAETKTKKAAESLRRSVEKYNSARADFEQKMLDSAL
         : :      ...  . ..... ::. :. .:...: : :. ::.:.. . ..:. ..:
KIAA03 QRDLEMKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTL
       290       300       310       320       330       340       

         220       230       240       250        260       270    
KIAA02 RFQAMEETHLRHMKALLGSYAHSVEDTHVQIGQVHEEFKQN-IENVSVEMLLRKFAESKG
       ... .:  ... ..  : .:        .:. .  . :.:. .:   :..::::   .: 
KIAA03 ELERLEVERVEMIRQHLCQY--------TQLRHETDMFNQSTVE--PVDQLLRKVDPAKD
       350       360               370       380         390       

              280          290       300       310       320       
KIAA02 TG---RE-KPG---PLDFEAYSAAALQEAMKRLRGAKAFRLPGLSRREREPEPPAAVDFL
            :: : :   :.:.:                                         
KIAA03 RELWVREHKTGNIRPVDMEI                                        
       400       410                                               




906 residues in 1 query   sequences
1986599 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:48 2008 done: Thu Dec 18 15:14:49 2008
 Total Scan time:  0.660 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]