hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22400486/chunk_1/iprscan-20080501-22400486.nocrc
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Query sequence: KIAA0289
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00457                                                 207.5    1.2e-57   1
SM00181                                                  35.0      1e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00181    1/3     470   507 ..     1    32 []    15.9      5.6
SM00181    2/3     611   652 ..     1    32 []    10.4       31
SM00181    3/3     659   708 ..     1    32 []     8.6       44
SM00457    1/1     811   999 ..     1   232 []   207.5  1.2e-57

Alignments of top-scoring domains:
SM00181: domain 1 of 3, from 470 to 507: score 15.9, E = 5.6
                   *->eCa.....pCsnGgtEqnGtCi..sytC.CpgpGytg......rCe<
                       Ca++  +pC++       +C +++ +C C  +Gy+ ++ +++ C+ 
    KIAA0289   470    LCArrlldPCEH-------QCDpeTGEClCY-EGYMKdpvhkhLCI  507  

                   -*
                     
    KIAA0289     -    -    

SM00181: domain 2 of 3, from 611 to 652: score 10.4, E = 31
                   *->eCa....pCsnGgtEqnGtCi......sytC.CpgpGytg.....rC
                      +C++++++Cs +      +Ci++++ +s  C Cp  G +  ++++ C
    KIAA0289   611    DCSkdngGCSKNF-----RCIsdrkldSTGCvCP-SGLSPmkdssGC 651  

                   e<-*
                       
    KIAA0289   652 Y    652  

SM00181: domain 3 of 3, from 659 to 708: score 8.6, E = 44
                   *->eCa.....pCsnGgtEqnGtCi...............sytC.CpgpG
                      +C+++ +++C++        C+    + +++++  +    C+C  + 
    KIAA0289   659    DCSdgfngGCEQ-------LCLqqmapfpddptlyniLMFCgCI-ED 697  

                   ytg.....rCe<-*
                   y+++ ++++C+   
    KIAA0289   698 YKLgvdgrSCQ    708  

SM00457: domain 1 of 1, from 811 to 999: score 207.5, E = 1.2e-57
                   *->qflvardtVrvrlytvkldesdlplaleFlkalrdLpdqynsanspd
                      ++++++++Vr+++y++kl+  ++ +++ + +al++L   +++a    
    KIAA0289   811    YPVLQHWKVRSVMYHIKLN--QVAISQALSNALHSLDGATSRA---- 851  

                   qayarfiddYGTHYitSatlGGeyslllvldkeslerkgwltsediskcl
                    ++++++d++G+HYi++a +G+e+s+ +++++++++r++wl++edisk++
    KIAA0289   852 -DFVALLDQFGNHYIQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGN 900  

                   ngeakvelassnlvagsvsaemkhctqssssskslstresqtvrlshtqv
                   ++++++e       +++ +++   ++++ ++++sls++        ++++
    KIAA0289   901 SPSDESE-------ERERDPK---VLTFPEYITSLSDSG-------TKRM 933  

                   lGGaseaievledlergrkgclqsnsldfseWaesvpneaPvlidvksla
                   + G    +++++ +++gr  c++s++l++++++ ++p+e Pvl++v+++a
    KIAA0289   934 AAG----VRMEC-QSKGR--CPSSCPLCHVTSSPDTPAE-PVLLEVTKAA 975  

                   PiyeLlpespfpvlvaleaspkreaLrqAlesYlk<-*
                   PiyeL++++           ++++ L++A++s+l+   
    KIAA0289   976 PIYELVTNN-----------QTQRLLQEATMSSLW    999  

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