hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22281527/chunk_1/iprscan-20080501-22281527.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0283 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00194 802.6 8.8e-237 2 SM00404 272.3 3.8e-77 2 SM00137 254.9 6.4e-72 1 SM00060 79.9 3.2e-19 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00137 1/1 57 221 .. 1 192 [] 254.9 6.4e-72 SM00060 1/3 318 401 .. 1 69 [] 26.2 0.0046 SM00060 2/3 414 503 .. 1 69 [] 22.6 0.053 SM00060 3/3 515 605 .. 1 69 [] 31.0 0.00016 SM00194 1/2 918 1175 .. 1 308 [] 460.9 6.1e-134 SM00404 1/2 1071 1172 .. 1 92 [] 159.6 3.1e-43 SM00194 2/2 1204 1469 .. 1 308 [] 341.6 5.1e-98 SM00404 2/2 1361 1466 .. 1 92 [] 112.6 4.3e-29 Alignments of top-scoring domains: SM00137: domain 1 of 1, from 57 to 221: score 254.9, E = 6.4e-72 *->tsegnCdFEegndktlCgwhqdsnddtGgeWervssatrifsamsat + +g+C+F+e+++ Cg++ +++++ G+ We++++++ KIAA0283 57 SAPGGCSFDEHYS--NCGYSVALGTN-GFTWEQINTWE--------- 91 gpnrDhttgnglGhymfvetssgkeggqtArLlSpplkenrsthCltFwY +p++D+ +++g ++m+v++s+++ gq+A+Ll+p+lken +thC++F+Y KIAA0283 92 KPMLDQAVPTG--SFMMVNSSGRAS-GQKAHLLLPTLKEN-DTHCIDFHY 137 ymySrgGsgvgteLnvyvrpensgeqdteklvllWsrsGtqggqWlqaev y +Sr+ s++g+ Lnvyv+ +n+g+q++ ++W++sG+ + W++ae+ KIAA0283 138 YFSSRDRSSPGA-LNVYVK-VNGGPQGN----PVWNVSGVVTEGWVKAEL 181 alstgfspqpfqVvFegtrgskgssGyIALDDIllsngpseeCgk<-* a+st f+p+++qV+Fe++ kg+ GyIA+D+++++++p C+k KIAA0283 182 AIST-FWPHFYQVIFESVSL-KGHPGYIAVDEVRVLAHP---CRK 221 SM00060: domain 1 of 3, from 318 to 401: score 26.2, E = 0.0046 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg P+ P p +++ +v++t + ++ ++ + ++++ ++v+ KIAA0283 318 PPTPIAP--PELLAVGAT------YLWIKPNANsiigdgpiilkEVE 356 Yr................ytltgLkPgaepwteYefrVrAvngndaGeg< Yr++++++ ++ +++++y+l +L P+ eYe+rV +++G g KIAA0283 357 YRtttgtwaethivdspnYKLWHLDPD----VEYEIRVLLTRPGEGGTG 401 -* KIAA0283 - - SM00060: domain 2 of 3, from 414 to 503: score 22.6, E = 0.053 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv +p+ +p++++++d+ ++ ++tl+Wep ++ ++++ +v KIAA0283 414 ADPVHGPQNVEIVDIRAR------QLTLQWEPFgyavtrchsynlTV 454 gYr...................ytltgLkPgaepwteYefrVrAvngnda +Y+ + ++++ + +++ ++++ ytl+gL+P + + r+ n ++ KIAA0283 455 QYQyvfnqqqyeaeeviqtsshYTLRGLRPF----MTIRLRLLLSNPEGR 500 Geg<-* e+ KIAA0283 501 MES 503 SM00060: domain 3 of 3, from 515 to 605: score 31.0, E = 0.00016 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY Pg+++ ++ + + ++W+pP++ ++ ++++Y KIAA0283 515 PGAVPL---ESIQGGPFEE-----KIYIQWKPPnetngvitlyEINY 553 r..........................ytltgLkPgaepwteYefrVrAv + +++ +++ + +++++++ + ++++ + + gL Pg t+Y+f+++A KIAA0283 554 KavgsldpsadlssqrgkvfklrnethHLFVGLYPG----TTYSFTIKAS 599 ngndaGeg<-* ++ +G g KIAA0283 600 TA--KGFG 605 SM00194: domain 1 of 2, from 918 to 1175: score 460.9, E = 6.1e-134 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi g++eE+e l++ ++ s+++a+ +eNr +KNRY +i KIAA0283 918 GFKEEYEALPEGQTA----------SWDTAKEDENR--NKNRYG-NI 951 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT + yDh+RV+L +dg+ ++sDYINAnyidgy++p+ yIaTQGP+++T KIAA0283 952 ISYDHSRVRLLVLDGD----PHSDYINANYIDGYHRPRHYIATQGPMQET 997 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPeesltyG v DFWrM+w++++++IVM tnlvE gr+KC +YWP+++++yG KIAA0283 998 VKDFWRMIWQENSASIVMVTNLVEV--------GRVKCVRYWPDDTEVYG 1039 ditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytnW di+Vtl+++e l+ +y+iRt++v+++g e r+++ +h+t+W KIAA0283 1040 DIKVTLIETEPLA-EYVIRTFTVQKKGY--------HEIRELRLFHFTSW 1080 PDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPiv PDhgvP +++ll fvr+v+ ++ + +gPiv KIAA0283 1081 PDHGVPCYATGLLGFVRQVKFLNPPE-------------------AGPIV 1111 VHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTee VHCSAG+GRTG+Fiaid++l++ e+++ vdif++V+elR qR ++VQTee KIAA0283 1112 VHCSAGAGRTGCFIAIDTMLDMAENegvVDIFNCVRELRAQRVNLVQTEE 1161 QYiFlyraileylk<-* QY+F+++aile ++ KIAA0283 1162 QYVFVHDAILEACL 1175 SM00404: domain 1 of 2, from 1071 to 1172: score 159.6, E = 3.1e-43 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV +++ +h+t+WpDh gvP ++l f+r+v+ ++++ +PivV KIAA0283 1071 ELRLFHFTSWPDH-----GVPCyaTGLLGFVRQVKFlnppeagPIVV 1112 HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ HCSAG+GRTG+f+aid++l++ ++++ vdif++v+elR qR ++vqteeQ KIAA0283 1113 HCSAGAGRTGCFIAIDTMLDMaenegvVDIFNCVRELRAQRVNLVQTEEQ 1162 YlFlyralle<-* Y+F+++a+le KIAA0283 1163 YVFVHDAILE 1172 SM00194: domain 2 of 2, from 1204 to 1469: score 341.6, E = 5.1e-98 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi ++++Ef++l +tp +++ +c+++ lp N+ +KNR+ d+ KIAA0283 1204 QIKDEFQTLNIVTPRVRPE------DCSIGLLPRNH--DKNRSM-DV 1241 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT lp D++ L + dg e+s+YINA +d++k+p a+ +TQ+PLp+T KIAA0283 1242 LPLDRCLPFLISVDG-----ESSNYINAALMDSHKQPAAFVVTQHPLPNT 1286 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty v+DFWr V++++++++VML++ + C qYWPe++s +y KIAA0283 1287 VADFWRLVFDYNCSSVVMLNEMDTA----------QFCMQYWPEKtSGCY 1326 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn G i+V++vs ++ + d++ R ++++n + + + r+V h++y + KIAA0283 1327 GPIQVEFVSADIDE-DIIHRIFRICNMARPQ------DGYRIVQHLQYIG 1369 WPDh.gvPespkslldfvrlvrksqssspnssenivssnskyagtspsgP WP +++P+s +sll+ vr+ +k+q+++ + ++g KIAA0283 1370 WPAYrDTPPSKRSLLKVVRRLEKWQEQY----------------DGREGR 1403 ivVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQT +vVHC +G GR+GTF+ai+ +++++++++ +d+f iVk+lR+ +mV+T KIAA0283 1404 TVVHCLNGGGRSGTFCAICSVCEMIQQqniIDVFHIVKTLRNNKSNMVET 1453 eeQYiFlyraileylk<-* +eQY+F+y+++leyl+ KIAA0283 1454 LEQYKFVYEVALEYLS 1469 SM00404: domain 2 of 2, from 1361 to 1466: score 112.6, E = 4.3e-29 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk..........P +v h++y gWp + +P ++ s+l+ +r+++k +++ +++++ KIAA0283 1361 IVQHLQYIGWPAY----RDTPPskRSLLKVVRRLEKwqeqydgregR 1403 ivVHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqt +vVHC +G GR+Gtf+ai++++++ ++++ +d+f +vk lR+ + +mv+t KIAA0283 1404 TVVHCLNGGGRSGTFCAICSVCEMiqqqniIDVFHIVKTLRNNKSNMVET 1453 eeQYlFlyralle<-* +eQY+F+y++ le KIAA0283 1454 LEQYKFVYEVALE 1466 //