hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22281527/chunk_1/iprscan-20080501-22281527.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0283 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00102.17.ls Protein-tyrosine phosphatase 787.4 7.7e-234 2 PF00102.17.fs Protein-tyrosine phosphatase 783.8 9.3e-233 2 PF00629.13.ls MAM domain 201.8 1.5e-57 1 PF00629.13.fs MAM domain 199.9 5.4e-57 1 PF00041.11.fs Fibronectin type III domain 86.0 4.6e-24 3 PF00041.11.ls Fibronectin type III domain 83.9 4.5e-22 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00629.13.fs 1/1 62 221 .. 1 180 [] 199.9 5.4e-57 PF00629.13.ls 1/1 62 221 .. 1 180 [] 201.8 1.5e-57 PF00041.11.fs 1/3 319 404 .. 1 84 [] 37.9 3e-10 PF00041.11.ls 1/3 319 404 .. 1 84 [] 39.9 8.1e-09 PF00041.11.ls 3/3 515 608 .. 1 84 [] 42.3 1.6e-09 PF00041.11.fs 3/3 532 608 .. 17 84 .] 42.2 1.8e-11 PF00102.17.fs 1/2 942 1172 .. 1 275 [] 458.5 8e-135 PF00102.17.ls 1/2 942 1172 .. 1 275 [] 460.3 2.3e-135 PF00102.17.fs 2/2 1232 1466 .. 1 275 [] 325.3 9.7e-95 PF00102.17.ls 2/2 1232 1466 .. 1 275 [] 327.1 2.8e-95 Alignments of top-scoring domains: PF00629.13.fs: domain 1 of 1, from 62 to 221: score 199.9, E = 5.4e-57 *->CdFdwdEeedhPlCgWtqdst.dgfdgWtrqsgatptsstGPpgDHt C+F dE+++ Cg++ ++++gf+ W+++++ ++++ +++ + KIAA0283 62 CSF--DEHYS--NCGYSVALGtNGFT-WEQINT---WEKPMLDQAVP 100 mfqnngsGhYmyvetsdlgqeGqkArLlSPplsppgsacClsFwYhmyGs G++m+v++s ++++GqkA+Ll P+l++++++ C++F+Y+++++ KIAA0283 101 ------TGSFMMVNSS-GRASGQKAHLLLPTLKENDTH-CIDFHYYFSSR 142 gks.vgtLnvyvreegesekdpvllWsrsGsqgpnWleaevtvnllksek ++s++g Lnvyv+++g+++++p +W++sG + W ae+++ ++++++ KIAA0283 143 DRSsPGALNVYVKVNGGPQGNP--VWNVSGVVTEGWVKAELAI-STFWPH 189 pfqviFEgvrglpgsaGdIAlDDIsindis.gpCpe<-* +qviFE+v +g+ G+IA+D+++ + +pC++ KIAA0283 190 FYQVIFESVSL-KGHPGYIAVDEVR---VLaHPCRK 221 PF00629.13.ls: domain 1 of 1, from 62 to 221: score 201.8, E = 1.5e-57 *->CdFdwdEeedhPlCgWtqdst.dgfdgWtrqsgatptsstGPpgDHt C+F dE+++ Cg++ ++++gf+ W+++++ ++++ +++ + KIAA0283 62 CSF--DEHYS--NCGYSVALGtNGFT-WEQINT---WEKPMLDQAVP 100 mfqnngsGhYmyvetsdlgqeGqkArLlSPplsppgsacClsFwYhmyGs G++m+v++s ++++GqkA+Ll P+l++++++ C++F+Y+++++ KIAA0283 101 ------TGSFMMVNSS-GRASGQKAHLLLPTLKENDTH-CIDFHYYFSSR 142 gks.vgtLnvyvreegesekdpvllWsrsGsqgpnWleaevtvnllksek ++s++g Lnvyv+++g+++++p +W++sG + W ae+++ ++++++ KIAA0283 143 DRSsPGALNVYVKVNGGPQGNP--VWNVSGVVTEGWVKAELAI-STFWPH 189 pfqviFEgvrglpgsaGdIAlDDIsindis.gpCpe<-* +qviFE+v +g+ G+IA+D+++ + +pC++ KIAA0283 190 FYQVIFESVSL-KGHPGYIAVDEVR---VLaHPCRK 221 PF00041.11.fs: domain 1 of 3, from 319 to 404: score 37.9, E = 3e-10 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P + + +v++t+l + ++ + g+gpi ev+yR ++ +g KIAA0283 319 PTPIAPPELLAVGATYLWIKPNANSiiGDGPIILKEVEYR-TT-TGT 363 wkeltvpgtttsytltgLkPgteYtvrVq.AvnggG..GpeS<-* w e + + y l L P++eY++rV ++ g+G++Gp+ KIAA0283 364 WAETHIVDSP-NYKLWHLDPDVEYEIRVLlTRPGEGgtGPPG 404 PF00041.11.ls: domain 1 of 3, from 319 to 404: score 39.9, E = 8.1e-09 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P + + +v++t+l + ++ + g+gpi ev+yR ++ +g KIAA0283 319 PTPIAPPELLAVGATYLWIKPNANSiiGDGPIILKEVEYR-TT-TGT 363 wkeltvpgtttsytltgLkPgteYtvrVq.AvnggG..GpeS<-* w e + + y l L P++eY++rV ++ g+G++Gp+ KIAA0283 364 WAETHIVDSP-NYKLWHLDPDVEYEIRVLlTRPGEGgtGPPG 404 PF00041.11.ls: domain 3 of 3, from 515 to 608: score 42.3, E = 1.6e-09 *->PsaPtnltvtdv.tstsltlsWspPt.gngpitgYevtyRqpkngge P+a+ ++ + + + + ++W+pP + ng+it Ye+ y + +++ + KIAA0283 515 PGAVPLESIQGGpFEEKIYIQWKPPNeTNGVITLYEINY-KAVGSLD 560 .........wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS< ++ + ++++ k + + + t ++ + gL Pgt+Y+++++A +++G Gp+ KIAA0283 561 psadlssqrGKVFKLRNET-HHLFVGLYPGTTYSFTIKASTAKGfGPPV 608 -* KIAA0283 - - PF00041.11.fs: domain 3 of 3, from 532 to 608: score 42.2, E = 1.8e-11 *->ltlsWspPt.gngpitgYevtyRqpkngge.........wkeltvpg + ++W+pP + ng+it Ye+ y + +++ +++ + ++++ k + + + KIAA0283 532 IYIQWKPPNeTNGVITLYEINY-KAVGSLDpsadlssqrGKVFKLRN 577 tttsytltgLkPgteYtvrVqAvnggG.GpeS<-* t ++ + gL Pgt+Y+++++A +++G Gp+ KIAA0283 578 ET-HHLFVGLYPGTTYSFTIKASTAKGfGPPV 608 PF00102.17.fs: domain 1 of 2, from 942 to 1172: score 458.5, E = 8e-135 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNRy +i+ yDh+RV+L ++gd++sDYINA+yidg KIAA0283 942 NRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDG-------- 980 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y++p++yIaTQgP+++T++DFWrM+w++++++IVM+t+lvE gr +K C KIAA0283 981 YHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGR--VK-C 1027 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +YWP+ ++++yGdi+Vtl+++e +a+y++Rt++++++g KIAA0283 1028 VRYWPD-----DTEVYGDIKVTLIETEPLAEYVIRTFTVQKkGY------ 1066 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg +e r+++ fh+t+WPDhgvP +++ll ++r+v+ +p KIAA0283 1067 -----HEIRELRLFHFTSWPDHGVPCY-ATGLLGFVRQVKFLNP------ 1104 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf p +g PivVHCSAG+GRTG+fiaid++l++ e+eg+v d+f KIAA0283 1105 ---PEAG-------PIVVHCSAGAGRTGCFIAIDTMLDMAENEGVV-DIF 1143 diVkelRsqRpgmVQteeQYiFlydaile<-* ++V+elR+qR ++VQteeQY+F++daile KIAA0283 1144 NCVRELRAQRVNLVQTEEQYVFVHDAILE 1172 PF00102.17.ls: domain 1 of 2, from 942 to 1172: score 460.3, E = 2.3e-135 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNRy +i+ yDh+RV+L ++gd++sDYINA+yidg KIAA0283 942 NRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDG-------- 980 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y++p++yIaTQgP+++T++DFWrM+w++++++IVM+t+lvE gr +K C KIAA0283 981 YHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGR--VK-C 1027 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +YWP+ ++++yGdi+Vtl+++e +a+y++Rt++++++g KIAA0283 1028 VRYWPD-----DTEVYGDIKVTLIETEPLAEYVIRTFTVQKkGY------ 1066 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg +e r+++ fh+t+WPDhgvP +++ll ++r+v+ +p KIAA0283 1067 -----HEIRELRLFHFTSWPDHGVPCY-ATGLLGFVRQVKFLNP------ 1104 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf p +g PivVHCSAG+GRTG+fiaid++l++ e+eg+v d+f KIAA0283 1105 ---PEAG-------PIVVHCSAGAGRTGCFIAIDTMLDMAENEGVV-DIF 1143 diVkelRsqRpgmVQteeQYiFlydaile<-* ++V+elR+qR ++VQteeQY+F++daile KIAA0283 1144 NCVRELRAQRVNLVQTEEQYVFVHDAILE 1172 PF00102.17.fs: domain 2 of 2, from 1232 to 1466: score 325.3, E = 9.7e-95 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNR+ d+lp+D++ L ++ ++e+s+YINA +d+ KIAA0283 1232 NHDKNRSMDVLPLDRCLPFLISV-DGESSNYINAALMDS-------- 1269 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC +k+p a+ +TQ+PlpnT++DFWr v++++++++VML+e + + C KIAA0283 1270 HKQPAAFVVTQHPLPNTVADFWRLVFDYNCSSVVMLNEMDTAQF-----C 1314 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina qYWPe +s yG+i+V+ vs + ++d++ R ++++n +++ KIAA0283 1315 MQYWPE----KTSGCYGPIQVEFVSADIDEDIIHRIFRICNmARPQ---- 1356 kqekkgetrtVthfhytgWPDh.gvPesgpkslldllrkvrksqpsnvel + r+V+h++y+gWP ++++P+s+ +sll+++r+++k+q++ KIAA0283 1357 -----DGYRIVQHLQYIGWPAYrDTPPSK-RSLLKVVRRLEKWQEQ---- 1396 gerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidv ++++ g +vVHC +G GR+Gtf+ai +++++++ + + dv KIAA0283 1397 --YDGREG-------RTVVHCLNGGGRSGTFCAICSVCEMIQQQNII-DV 1436 fdiVkelRsqRpgmVQteeQYiFlydaile<-* f+iVk+lR+ +mV+t+eQY+F+y++ le KIAA0283 1437 FHIVKTLRNNKSNMVETLEQYKFVYEVALE 1466 PF00102.17.ls: domain 2 of 2, from 1232 to 1466: score 327.1, E = 2.8e-95 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNR+ d+lp+D++ L ++ ++e+s+YINA +d+ KIAA0283 1232 NHDKNRSMDVLPLDRCLPFLISV-DGESSNYINAALMDS-------- 1269 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC +k+p a+ +TQ+PlpnT++DFWr v++++++++VML+e + + C KIAA0283 1270 HKQPAAFVVTQHPLPNTVADFWRLVFDYNCSSVVMLNEMDTAQF-----C 1314 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina qYWPe +s yG+i+V+ vs + ++d++ R ++++n +++ KIAA0283 1315 MQYWPE----KTSGCYGPIQVEFVSADIDEDIIHRIFRICNmARPQ---- 1356 kqekkgetrtVthfhytgWPDh.gvPesgpkslldllrkvrksqpsnvel + r+V+h++y+gWP ++++P+s+ +sll+++r+++k+q++ KIAA0283 1357 -----DGYRIVQHLQYIGWPAYrDTPPSK-RSLLKVVRRLEKWQEQ---- 1396 gerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidv ++++ g +vVHC +G GR+Gtf+ai +++++++ + + dv KIAA0283 1397 --YDGREG-------RTVVHCLNGGGRSGTFCAICSVCEMIQQQNII-DV 1436 fdiVkelRsqRpgmVQteeQYiFlydaile<-* f+iVk+lR+ +mV+t+eQY+F+y++ le KIAA0283 1437 FHIVKTLRNNKSNMVETLEQYKFVYEVALE 1466 //