hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22174466/chunk_1/iprscan-20080501-22174466.nocrc
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Query sequence: KIAA0277
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00147                                                 362.4   2.9e-104   1
SM00229                                                 139.1    4.8e-37   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00229     1/1      70   204 ..     1   172 []   139.1  4.8e-37
SM00147     1/1     344   583 .]     1   261 []   362.4 2.9e-104

Alignments of top-scoring domains:
SM00229: domain 1 of 1, from 70 to 204: score 139.1, E = 4.8e-37
                   *->ckggliKgGtlekLiehLteardkgkvdlkaDptfvetFLlTYRsFi
                      ++++++ +Gt+ek++ehL+++++ + v++k+ +t++++FLlTY +F+
    KIAA0277    70    SDRYVVVSGTPEKILEHLLNDLHLEEVQDKETETLLDDFLLTYTVFM 116  

                   ttqeLlqkLldrYnaippeivsrSlelkateaseglsfedysknaipvgf
                   tt +L+q+Ll++Y a +++                               
    KIAA0277   117 TTDDLCQALLRHYSAKKYQ------------------------------- 135  

                   aetdiivkekvnprriqnrVlnilrlWvenywedFeedpklnlfLeelfl
                         ++e+++ +r++++Vl+++++W+++y  +  ed ++++fL++++ 
    KIAA0277   136 -----GKEENSDVPRRKRKVLHLVSQWIALYKDWLPEDEHSKMFLKTIYR 180  

                   elvedkkdkgpglekslanilerls<-*
                   ++++d + ++p lek+l++++++l+   
    KIAA0277   181 NVLDDVY-EYPILEKELKEFQKILG    204  

SM00147: domain 1 of 1, from 344 to 583: score 362.4, E = 2.9e-104
                   *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap
                      +l +++++lA  L+ +d++lF++I+++El++++++++ + ++++   
    KIAA0277   344    ILGMNTWDLALELMNFDWSLFNSIHEQELIYFTFSRQGSGEHTA--- 387  

                   qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn
                    nl ++ +r+Nev+ wVateIl++ +  + kR+++++kFIk+A+hc+ ++
    KIAA0277   388 -NLSLLLQRCNEVQLWVATEILLCSQ--LGKRVQLVKKFIKIAAHCKAQR 434  

                   NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk
                   N+nS++AIv++L+++++sRL+ TWek++ k+kklf+eLe+l+dps  N+k
    KIAA0277   435 NLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKLFSELESLTDPS-LNHK 483  

                   nYReaLkscnkspnvqppcvPflGvyLkDLtfidegnpdflengtkglvN
                   +YR+a+k+++      pp++Pf++++LkD tfi+egn++fl+    +lvN
    KIAA0277   484 AYRDAFKKMK------PPKIPFMPLLLKDVTFIHEGNKTFLD----NLVN 523  

                   FeKrrkiakilreirqlqsacqpynlkpnr.ndiqellrasrplevlpee
                   FeK+++ia+++r++r+++ + q+ +l p ++++++++ ++   l v++++
    KIAA0277   524 FEKLHMIADTVRTLRHCRTN-QFGDLSPKEhQELKSYVNH---LYVIDSQ 569  

                   edelyelSlriEPrv<-*
                   +  l+elS+riEPrv   
    KIAA0277   570 Q-ALFELSHRIEPRV    583  

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