hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22160860/chunk_1/iprscan-20080501-22160860.nocrc
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Query sequence: KIAA0276
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03556.6.ls Domain of unknown function (DUF298)            200.3    4.3e-57   1
PF03556.6.fs Domain of unknown function (DUF298)            198.4    1.5e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03556.6.fs   1/1     190   304 ..     1   138 []   198.4  1.5e-56
PF03556.6.ls   1/1     190   304 ..     1   138 []   200.3  4.3e-57

Alignments of top-scoring domains:
PF03556.6.fs: domain 1 of 1, from 190 to 304: score 198.4, E = 1.5e-56
                   *->iqkLkerlpfleseLesFLFLsLeGeDpekFkdiYrfAFnfakdpid
                      ++kL+  l++l+s L+          D+ +Fk iYr+AF+fa+++ d
    KIAA0276   190    TEKLRNTLDYLRSFLN----------DSTNFKLIYRYAFDFAREK-D 225  

                   qkslDletaialwkllfgseYPvRcrwpllehwidFLedhhnranRvIsk
                   q+slD+ ta++++ ll+g+       wpl++++ +FLe+++++    I+k
    KIAA0276   226 QRSLDINTAKCMLGLLLGK------IWPLFPVFHQFLEQSKYKV---INK 266  

                   DtWnllLeFsrRYEtidpDlsnYDeegAWPvLiDeFVEwlq<-*
                   D+W+++LeFsr   ti  DlsnYDe+gAWPvL+DeFVEw +   
    KIAA0276   267 DQWCNVLEFSR---TINLDLSNYDEDGAWPVLLDEFVEWYK    304  

PF03556.6.ls: domain 1 of 1, from 190 to 304: score 200.3, E = 4.3e-57
                   *->iqkLkerlpfleseLesFLFLsLeGeDpekFkdiYrfAFnfakdpid
                      ++kL+  l++l+s L+          D+ +Fk iYr+AF+fa+++ d
    KIAA0276   190    TEKLRNTLDYLRSFLN----------DSTNFKLIYRYAFDFAREK-D 225  

                   qkslDletaialwkllfgseYPvRcrwpllehwidFLedhhnranRvIsk
                   q+slD+ ta++++ ll+g+       wpl++++ +FLe+++++    I+k
    KIAA0276   226 QRSLDINTAKCMLGLLLGK------IWPLFPVFHQFLEQSKYKV---INK 266  

                   DtWnllLeFsrRYEtidpDlsnYDeegAWPvLiDeFVEwlq<-*
                   D+W+++LeFsr   ti  DlsnYDe+gAWPvL+DeFVEw +   
    KIAA0276   267 DQWCNVLEFSR---TINLDLSNYDEDGAWPVLLDEFVEWYK    304  

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