hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22143281/chunk_1/iprscan-20080501-22143281.nocrc
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Query sequence: KIAA0275
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00086.8.ls    Thyroglobulin type-1 repeat              75.9    1.2e-19   1
PF00086.8.fs    Thyroglobulin type-1 repeat              74.1    4.1e-19   1
PF07648.6.ls    Kazal-type serine protease inhibitor     55.1    2.2e-13   1
PF07648.6.fs    Kazal-type serine protease inhibitor     53.3      3e-13   1
PF00050.11.fs   Kazal-type serine protease inhibitor     31.2    1.1e-07   1
PF00050.11.ls   Kazal-type serine protease inhibitor     32.9      1e-06   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF07648.6.ls      1/1     221   266 ..     1    61 []    55.1  2.2e-13
PF07648.6.fs      1/1     221   266 ..     1    61 []    53.3    3e-13
PF00050.11.fs     1/1     222   266 ..     1    61 []    31.2  1.1e-07
PF00050.11.ls     1/1     222   266 ..     1    61 []    32.9    1e-06
PF00086.8.fs      1/1     399   462 ..     1    81 []    74.1  4.1e-19
PF00086.8.ls      1/1     399   462 ..     1    81 []    75.9  1.2e-19

Alignments of top-scoring domains:
PF07648.6.ls: domain 1 of 1, from 221 to 266: score 55.1, E = 2.2e-13
                   *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag
                       C+           C  ++ +  VCGsDG +TYs+ C+l++++C++ 
    KIAA0275   221    ICK----------PCHMAQ-LASVCGSDG-HTYSSVCKLEQQACLSS 255  

                   flegelrlkydGeC<-*
                      ++l ++++G+C   
    KIAA0275   256 ---KQLAVRCEGPC    266  

PF07648.6.fs: domain 1 of 1, from 221 to 266: score 53.3, E = 3e-13
                   *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag
                       C+           C  ++ +  VCGsDG +TYs+ C+l++++C++ 
    KIAA0275   221    ICK----------PCHMAQ-LASVCGSDG-HTYSSVCKLEQQACLSS 255  

                   flegelrlkydGeC<-*
                      ++l ++++G+C   
    KIAA0275   256 ---KQLAVRCEGPC    266  

PF00050.11.fs: domain 1 of 1, from 222 to 266: score 31.2, E = 1.1e-07
                   *->CsrypnptskDGklvaCp.reydPVCGsDGvTYsNECeLkkaaCaen
                      C+              C  +++  VCGsDG+TYs+ C L++ aC   
    KIAA0275   222    CKP-------------CHmAQLASVCGSDGHTYSSVCKLEQQAC--- 252  

                   veqgtniekkhdGpC<-*
                     + +++ +   GpC   
    KIAA0275   253 -LSSKQLAVRCEGPC    266  

PF00050.11.ls: domain 1 of 1, from 222 to 266: score 32.9, E = 1e-06
                   *->CsrypnptskDGklvaCp.reydPVCGsDGvTYsNECeLkkaaCaen
                      C+              C  +++  VCGsDG+TYs+ C L++ aC   
    KIAA0275   222    CKP-------------CHmAQLASVCGSDGHTYSSVCKLEQQAC--- 252  

                   veqgtniekkhdGpC<-*
                     + +++ +   GpC   
    KIAA0275   253 -LSSKQLAVRCEGPC    266  

PF00086.8.fs: domain 1 of 1, from 399 to 462: score 74.1, E = 4.1e-19
                   *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp
                      C+ eler++ + a         + +++g+++P+Cde+G Y++ QCd 
    KIAA0275   399    CLAELERIQIQEA---------AKKKPGIFIPSCDEDGYYRKMQCDQ 436  

                   SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-*
                       + G CWCVD   G el+Gt +  G+  p+C   
    KIAA0275   437 ----SSGDCWCVDQL-GLELTGT-RTHGS--PDC    462  

PF00086.8.ls: domain 1 of 1, from 399 to 462: score 75.9, E = 1.2e-19
                   *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp
                      C+ eler++ + a         + +++g+++P+Cde+G Y++ QCd 
    KIAA0275   399    CLAELERIQIQEA---------AKKKPGIFIPSCDEDGYYRKMQCDQ 436  

                   SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-*
                       + G CWCVD   G el+Gt +  G+  p+C   
    KIAA0275   437 ----SSGDCWCVDQL-GLELTGT-RTHGS--PDC    462  

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