hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22112035/chunk_1/iprscan-20080501-22112035.nocrc
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Query sequence: KIAA0273
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.ls Fibronectin type III domain                      9.0      0.018   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00041.11.ls   1/1      30   131 ..     1    84 []     9.0    0.018

Alignments of top-scoring domains:
PF00041.11.ls: domain 1 of 1, from 30 to 131: score 9.0, E = 0.018
                   *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge.
                      +s P  + + ++t +s+++sW   +++   +t+Y +++ +++n++++
    KIAA0273    30    LSTPHSIEINNITCDSFRISWAMEDsDLERVTHYFIDLNKKENKNSn 76   

                   ......wkeltvpgttt.sytltg...LkPgteYtvrVq.AvnggG....
                   + +++++ ++ v +     +t++g+  L P teY+v Vq+Av++  ++  
    KIAA0273    77 kfkhrdVPTKLVAKAVPlPMTVRGhwfLSPRTEYSVAVQtAVKQSDgeyl 126  

                   .GpeS<-*
                    +++S   
    KIAA0273   127 vSGWS    131  

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