# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha06723.fasta.huge -Q ../query/KIAA0273.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0273, 356 aa
 vs ./tmplib.23147 library

1987149 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.0480+/-0.00463; mu= 17.4390+/- 0.316
 mean_var=78.3874+/-18.653, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.144861

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1796  ( 245 res)   fj18826                     ( 245) 1296 279.8 1.1e-76


>>KIAA1796  ( 245 res)   fj18826                          (245 aa)
 initn: 1296 init1: 1296 opt: 1296  Z-score: 1469.0  bits: 279.8 E(): 1.1e-76
Smith-Waterman score: 1296;  75.102% identity (91.020% similar) in 245 aa overlap (112-356:1-245)

              90       100       110       120       130       140 
KIAA02 DVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDY
                                     :::::: :: ::.:.:: ::: .::::.::
KIAA17                               VAVQTASKQVDGDYVVSEWSEIIEFCTADY
                                             10        20        30

             150       160       170       180       190       200 
KIAA02 AKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPT
       .: ::.:: :::: ::::::.:::::::.:::::...: : :: .:: .:::::::::: 
KIAA17 SKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPI
               40        50        60        70        80        90

             210       220       230       240       250       260 
KIAA02 SGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYA
       :: :.:.::::.::::::.:::::::::.::.: :..::::.:::::.:::::::::::.
KIAA17 SGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYV
              100       110       120       130       140       150

             270       280       290       300       310       320 
KIAA02 ILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLS
       :::.:: :: ::.::..::: :.   ::::::. ::: ::..::::.:::.:::.:::::
KIAA17 ILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVDLS
              160       170       180       190       200       210

             330       340       350      
KIAA02 LGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
       :::..::.::::::::::.::::::::::::::::
KIAA17 LGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
              220       230       240     




356 residues in 1 query   sequences
1987149 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:09 2008 done: Thu Dec 18 15:14:10 2008
 Total Scan time:  0.360 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]