hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22062770/chunk_1/iprscan-20080501-22062770.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0270
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF03285.5.ls Paralemmin                                   694.4   7.9e-206   1
PF03285.5.fs Paralemmin                                   692.6   2.7e-205   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF03285.5.fs   1/1      28   345 .]     1   348 []   692.6 2.7e-205
PF03285.5.ls   1/1      28   345 .]     1   348 []   694.4 7.9e-206

Alignments of top-scoring domains:
PF03285.5.fs: domain 1 of 1, from 28 to 345: score 692.6, E = 2.7e-205
                   *->ssiqlqsDefKttglevyvdRleseyevlennssayngTkenApvev
                      +++q+q+De+Kt++le++v+Rle+e+evle+++sa++++kenA++++
    KIAA0270    28    LRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPS 74   

                   eeLaraASpakeeskTEyhepvqanPfgtpvtpkRvsstplpgvngqeri
                   +++a+a+Spakee+kTE+++++q++P+gt +++kRvs+tpl++v+g++++
    KIAA0270    75 PVRAPAPSPAKEERKTEVVMNSQQTPVGT-PKDKRVSNTPLRTVDGSPMM 123  

                   kaamysveitVeKdsvtgeTkvLSsttllprnHlspgikVyedeskVvhA
                   kaamysveitVeKd+vtgeT+vLSsttllpr++l++gikVyede+kVvhA
    KIAA0270   124 KAAMYSVEITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHA 173  

                   veavhtaqkngaqPlssSeVDELlHkaDevtlSeagelSgaeeapGkses
                   v++++   +ng++PlssSeVDEL+HkaDevtlSeag+++ga+e++G++e+
    KIAA0270   174 VDGTA---ENGIHPLSSSEVDELIHKADEVTLSEAGSTAGAAETRGAVEG 220  

                   qasstpcrrEitgVraniveslpGPeGadpddeePVTMIFMGYQnvEDee
                   +a++tp+rrEitgV+a+++e+++GP+G++p++e+PVTMIFMGYQnvEDe+
    KIAA0270   221 AARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA 270  

                   EtKKvLTGldGtIhAELVVIeDEdaeeegepEkpsyaPpngsaqepqpaK
                   EtKKvL Gl++tI+AELVVIe  da+e++ep     aPpngsa+ep++  
    KIAA0270   271 ETKKVL-GLQDTITAELVVIE--DAAEPKEP-----APPNGSAAEPPT-- 310  

                   PtPLpRkeaeagpkpnTnhksPhknsISLKEQEErldsdakksrckcctv
                    ++++R+e++ag  p++++++P             +d+d+kk+rckcc++
    KIAA0270   311 -EAASREENQAG--PEATTSDP-------------QDLDMKKHRCKCCSI 344  

                   m<-*
                   m   
    KIAA0270   345 M    345  

PF03285.5.ls: domain 1 of 1, from 28 to 345: score 694.4, E = 7.9e-206
                   *->ssiqlqsDefKttglevyvdRleseyevlennssayngTkenApvev
                      +++q+q+De+Kt++le++v+Rle+e+evle+++sa++++kenA++++
    KIAA0270    28    LRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPS 74   

                   eeLaraASpakeeskTEyhepvqanPfgtpvtpkRvsstplpgvngqeri
                   +++a+a+Spakee+kTE+++++q++P+gt +++kRvs+tpl++v+g++++
    KIAA0270    75 PVRAPAPSPAKEERKTEVVMNSQQTPVGT-PKDKRVSNTPLRTVDGSPMM 123  

                   kaamysveitVeKdsvtgeTkvLSsttllprnHlspgikVyedeskVvhA
                   kaamysveitVeKd+vtgeT+vLSsttllpr++l++gikVyede+kVvhA
    KIAA0270   124 KAAMYSVEITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHA 173  

                   veavhtaqkngaqPlssSeVDELlHkaDevtlSeagelSgaeeapGkses
                   v++++   +ng++PlssSeVDEL+HkaDevtlSeag+++ga+e++G++e+
    KIAA0270   174 VDGTA---ENGIHPLSSSEVDELIHKADEVTLSEAGSTAGAAETRGAVEG 220  

                   qasstpcrrEitgVraniveslpGPeGadpddeePVTMIFMGYQnvEDee
                   +a++tp+rrEitgV+a+++e+++GP+G++p++e+PVTMIFMGYQnvEDe+
    KIAA0270   221 AARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA 270  

                   EtKKvLTGldGtIhAELVVIeDEdaeeegepEkpsyaPpngsaqepqpaK
                   EtKKvL Gl++tI+AELVVIe  da+e++ep     aPpngsa+ep++  
    KIAA0270   271 ETKKVL-GLQDTITAELVVIE--DAAEPKEP-----APPNGSAAEPPT-- 310  

                   PtPLpRkeaeagpkpnTnhksPhknsISLKEQEErldsdakksrckcctv
                    ++++R+e++ag  p++++++P             +d+d+kk+rckcc++
    KIAA0270   311 -EAASREENQAG--PEATTSDP-------------QDLDMKKHRCKCCSI 344  

                   m<-*
                   m   
    KIAA0270   345 M    345  

//