# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha06636.fasta.nr -Q ../query/KIAA0270.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0270, 345 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825679 sequences Expectation_n fit: rho(ln(x))= 6.1059+/-0.000193; mu= 6.3943+/- 0.011 mean_var=103.4961+/-19.826, 0's: 36 Z-trim: 42 B-trim: 3 in 1/64 Lambda= 0.126070 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|22653899|sp|O75781.2|PALM_HUMAN RecName: Full=P ( 387) 2231 415.9 6.8e-114 gi|3219602|emb|CAA76151.1| paralemin [Homo sapiens ( 387) 2226 414.9 1.3e-113 gi|189054789|dbj|BAG37611.1| unnamed protein produ ( 387) 2222 414.2 2.1e-113 gi|114674370|ref|XP_524021.2| PREDICTED: paralemmi ( 783) 2214 413.0 1e-112 gi|194668544|ref|XP_001253885.2| PREDICTED: simila ( 414) 1879 351.9 1.3e-94 gi|118573099|sp|Q2MJV8.1|PALM_PIG RecName: Full=Pa ( 387) 1858 348.0 1.8e-93 gi|22653923|sp|Q9Z0P4.1|PALM_MOUSE RecName: Full=P ( 383) 1794 336.4 5.7e-90 gi|26331906|dbj|BAC29683.1| unnamed protein produc ( 383) 1793 336.2 6.5e-90 gi|15823744|dbj|BAB68565.1| paralemmin [Rattus nor ( 383) 1783 334.4 2.3e-89 gi|221043494|dbj|BAH13424.1| unnamed protein produ ( 252) 1638 307.9 1.4e-81 gi|73987598|ref|XP_542216.2| PREDICTED: similar to ( 394) 1487 280.5 3.8e-73 gi|126323742|ref|XP_001375715.1| PREDICTED: simila ( 707) 1407 266.2 1.4e-68 gi|4456614|emb|CAB37401.1| PALM [Homo sapiens] ( 343) 1218 231.6 1.8e-58 gi|4186043|emb|CAA76152.1| paralemin [Homo sapiens ( 343) 1214 230.8 3e-58 gi|118103211|ref|XP_418217.2| PREDICTED: paralemmi ( 429) 1213 230.7 4e-58 gi|22653922|sp|Q9YGL6.1|PALM_CHICK RecName: Full=P ( 386) 1201 228.5 1.7e-57 gi|193785700|dbj|BAG51135.1| unnamed protein produ ( 270) 1188 226.0 6.6e-57 gi|109122698|ref|XP_001117149.1| PREDICTED: simila ( 363) 1154 219.9 6e-55 gi|74193950|dbj|BAE36902.1| unnamed protein produc ( 339) 1012 194.1 3.4e-47 gi|4456678|emb|CAB37404.1| PALM [Mus musculus] ( 339) 1011 193.9 3.9e-47 gi|15929750|gb|AAH15297.1| Palm protein [Mus muscu ( 339) 1008 193.4 5.6e-47 gi|149034654|gb|EDL89391.1| paralemmin, isoform CR ( 339) 1003 192.5 1.1e-46 gi|221042916|dbj|BAH13135.1| unnamed protein produ ( 172) 677 132.9 4.4e-29 gi|149634409|ref|XP_001506793.1| PREDICTED: simila ( 684) 681 134.1 7.8e-29 gi|3694629|gb|AAC62429.1| paralemmin, partial CDS ( 140) 626 123.6 2.3e-26 gi|74227493|dbj|BAE21809.1| unnamed protein produc ( 176) 586 116.4 4.3e-24 gi|149609979|ref|XP_001506134.1| PREDICTED: simila ( 216) 566 112.8 6.3e-23 gi|62205126|gb|AAH92750.1| Zgc:110136 [Danio rerio ( 321) 453 92.4 1.3e-16 gi|73971946|ref|XP_538782.2| PREDICTED: similar to ( 411) 450 91.9 2.3e-16 gi|15384740|emb|CAC59693.1| paralemmin-2 [Homo sap ( 411) 450 91.9 2.3e-16 gi|119579457|gb|EAW59053.1| hCG28765, isoform CRA_ ( 413) 450 91.9 2.3e-16 gi|15384742|emb|CAC59702.1| Palm2-AKAP2 fusion pro ( 433) 450 92.0 2.4e-16 gi|119579459|gb|EAW59055.1| hCG28765, isoform CRA_ (1335) 450 92.3 5.8e-16 gi|119579455|gb|EAW59051.1| hCG28765, isoform CRA_ (1337) 450 92.3 5.8e-16 gi|194669709|ref|XP_871123.3| PREDICTED: similar t (1331) 445 91.4 1.1e-15 gi|149642299|ref|XP_001512747.1| PREDICTED: simila (1312) 427 88.1 1e-14 gi|126334264|ref|XP_001375897.1| PREDICTED: simila (1302) 396 82.5 5.1e-13 gi|4456149|emb|CAB37359.1| PALM [Gallus gallus] ( 342) 381 79.3 1.2e-12 gi|189524033|ref|XP_699267.3| PREDICTED: similar t ( 324) 374 78.0 2.8e-12 gi|189524027|ref|XP_001921437.1| PREDICTED: simila ( 355) 369 77.2 5.7e-12 gi|4456150|emb|CAB37360.1| PALM [Gallus gallus] ( 321) 331 70.2 6.3e-10 gi|34785086|gb|AAH56777.1| Zgc:63523 [Danio rerio] ( 244) 319 67.9 2.3e-09 gi|169159010|emb|CAQ15657.1| novel protein similar ( 244) 314 67.0 4.4e-09 gi|189515779|ref|XP_688292.3| PREDICTED: similar t ( 459) 307 66.0 1.7e-08 gi|92097760|gb|AAI15258.1| LOC559824 protein [Dani ( 462) 307 66.0 1.7e-08 gi|63101228|gb|AAH95910.1| LOC594906 protein [Xeno ( 348) 303 65.2 2.3e-08 gi|149639159|ref|XP_001515954.1| PREDICTED: hypoth ( 548) 301 64.9 4.2e-08 gi|27881749|gb|AAH44690.1| LOC100101269 protein [X ( 319) 291 62.9 9.7e-08 gi|73960003|ref|XP_537059.2| PREDICTED: similar to ( 586) 279 61.0 7e-07 gi|82176498|sp|Q7ZX27.1|PALMD_XENLA RecName: Full= ( 535) 276 60.4 9.6e-07 >>gi|22653899|sp|O75781.2|PALM_HUMAN RecName: Full=Paral (387 aa) initn: 2231 init1: 2231 opt: 2231 Z-score: 2200.9 bits: 415.9 E(): 6.8e-114 Smith-Waterman score: 2231; 100.000% identity (100.000% similar) in 345 aa overlap (1-345:43-387) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :::::::::::::::::::::::::::::: gi|226 ERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSASEGDEDLRR 20 30 40 50 60 70 40 50 60 70 80 90 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT 80 90 100 110 120 130 100 110 120 130 140 150 KIAA02 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT 140 150 160 170 180 190 160 170 180 190 200 210 KIAA02 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG 200 210 220 230 240 250 220 230 240 250 260 270 KIAA02 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA 260 270 280 290 300 310 280 290 300 310 320 330 KIAA02 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ 320 330 340 350 360 370 340 KIAA02 DLDMKKHRCKCCSIM ::::::::::::::: gi|226 DLDMKKHRCKCCSIM 380 >>gi|3219602|emb|CAA76151.1| paralemin [Homo sapiens] (387 aa) initn: 2226 init1: 2226 opt: 2226 Z-score: 2196.0 bits: 414.9 E(): 1.3e-113 Smith-Waterman score: 2226; 99.710% identity (100.000% similar) in 345 aa overlap (1-345:43-387) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :::::::::::::::::::::::::::::: gi|321 ERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSASEGDEDLRR 20 30 40 50 60 70 40 50 60 70 80 90 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|321 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPAAAKENAAAPSPVRAPAPSPAKEERKT 80 90 100 110 120 130 100 110 120 130 140 150 KIAA02 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|321 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT 140 150 160 170 180 190 160 170 180 190 200 210 KIAA02 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|321 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG 200 210 220 230 240 250 220 230 240 250 260 270 KIAA02 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|321 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA 260 270 280 290 300 310 280 290 300 310 320 330 KIAA02 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|321 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ 320 330 340 350 360 370 340 KIAA02 DLDMKKHRCKCCSIM ::::::::::::::: gi|321 DLDMKKHRCKCCSIM 380 >>gi|189054789|dbj|BAG37611.1| unnamed protein product [ (387 aa) initn: 2222 init1: 2222 opt: 2222 Z-score: 2192.1 bits: 414.2 E(): 2.1e-113 Smith-Waterman score: 2222; 99.710% identity (99.710% similar) in 345 aa overlap (1-345:43-387) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :::::::::::::::::::::::::::::: gi|189 ERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSASEGDEDLRR 20 30 40 50 60 70 40 50 60 70 80 90 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT 80 90 100 110 120 130 100 110 120 130 140 150 KIAA02 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT 140 150 160 170 180 190 160 170 180 190 200 210 KIAA02 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 LLPRQPPPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG 200 210 220 230 240 250 220 230 240 250 260 270 KIAA02 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA 260 270 280 290 300 310 280 290 300 310 320 330 KIAA02 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ 320 330 340 350 360 370 340 KIAA02 DLDMKKHRCKCCSIM ::::::::::::::: gi|189 DLDMKKHRCKCCSIM 380 >>gi|114674370|ref|XP_524021.2| PREDICTED: paralemmin [P (783 aa) initn: 2214 init1: 2214 opt: 2214 Z-score: 2180.0 bits: 413.0 E(): 1e-112 Smith-Waterman score: 2214; 99.130% identity (100.000% similar) in 345 aa overlap (1-345:439-783) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR .::::::::::::::::::::::::::::: gi|114 PXXPSXXXXPXXPVDIDNKRRQLEDERRPLHHLKSKALRERWLLEGTPSSASEGDEDLRR 410 420 430 440 450 460 40 50 60 70 80 90 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|114 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPAAAKENAAAPSPVRAPAPSPAKEERKT 470 480 490 500 510 520 100 110 120 130 140 150 KIAA02 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT 530 540 550 560 570 580 160 170 180 190 200 210 KIAA02 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG 590 600 610 620 630 640 220 230 240 250 260 270 KIAA02 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA 650 660 670 680 690 700 280 290 300 310 320 330 KIAA02 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|114 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSEPQ 710 720 730 740 750 760 340 KIAA02 DLDMKKHRCKCCSIM ::::::::::::::: gi|114 DLDMKKHRCKCCSIM 770 780 >>gi|194668544|ref|XP_001253885.2| PREDICTED: similar to (414 aa) initn: 1598 init1: 1555 opt: 1879 Z-score: 1854.5 bits: 351.9 E(): 1.3e-94 Smith-Waterman score: 1879; 83.526% identity (93.931% similar) in 346 aa overlap (1-345:69-414) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :::::::::::::::::::::::::::.:: gi|194 ERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRR 40 50 60 70 80 90 40 50 60 70 80 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAP-ATAKENAAAPSPVRAPAPSPAKEERK :::.::::.: ::.:.::::.::: :: :. : :::. ..:::::. .:: :: :... gi|194 QMQEDEQKARHLEESISRLEQEIEELENTDALPTATARGSVAAPSPAPGPALRPAPEDQR 100 110 120 130 140 150 90 100 110 120 130 140 KIAA02 TEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSST .:.: :::::::::::.:..::::::::::: :::::::::::::::::::::::::::: gi|194 AEAVPNSQQTPVGTPKEKQISNTPLRTVDGSTMMKAAMYSVEITVEKDKVTGETRVLSST 160 170 180 190 200 210 150 160 170 180 190 200 KIAA02 TLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTA :.:::. :: ::::::::::::::.::::::::::::::::::::::::::::.::::.. gi|194 TVLPRELLPQGIKVYEDETKVVHAMDGTAENGIHPLSSSEVDELIHKADEVTLNEAGSVV 220 230 240 250 260 270 210 220 230 240 250 260 KIAA02 GAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDE ::.:::: : :.::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GAVETRGPSEEAVRTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDE 280 290 300 310 320 330 270 280 290 300 310 320 KIAA02 AETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDP :::.::::::::::::::::::::::::::::::::::::. .::::::.:::: ...: gi|194 AETQKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPATEGSREENQVGPEAPAAEP 340 350 360 370 380 390 330 340 KIAA02 QDLDMKKHRCKCCSIM :::::::.:::::::: gi|194 QDLDMKKQRCKCCSIM 400 410 >>gi|118573099|sp|Q2MJV8.1|PALM_PIG RecName: Full=Parale (387 aa) initn: 1075 init1: 1075 opt: 1858 Z-score: 1834.3 bits: 348.0 E(): 1.8e-93 Smith-Waterman score: 1858; 82.948% identity (93.064% similar) in 346 aa overlap (1-345:43-387) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :::::::::::::::::::::::::::.:. gi|118 ERLQAIAEKRRRQAEVENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSASEGDEDMRK 20 30 40 50 60 70 40 50 60 70 80 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSP-VRAPAPSPAKEERK :::.::::.::::.:..::::::: :: .:. :: .::. .:::: .::: ::.:.:: gi|118 QMQEDEQKARLLEESIARLEKEIEELENADTLPAPVKETQVAPSPGPVVPAPCPAQEDRK 80 90 100 110 120 130 90 100 110 120 130 140 KIAA02 TEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSST .:: .:.:::::::::.::.::::.: :.:: ::.::::::::::::::::::::::::. gi|118 AEVDLNAQQTPVGTPKEKRISNTPMRMVEGSTMMNAAMYSVEITVEKDKVTGETRVLSSA 140 150 160 170 180 190 150 160 170 180 190 200 KIAA02 TLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTA :.:::. : ::::::::::::::::::::::::::::::::::::::::::::::::.: gi|118 TVLPREHPPQGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSAA 200 210 220 230 240 250 210 220 230 240 250 260 KIAA02 GAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDE : :::: : ..::::::::::::::::::::::::::::::::::::::::::::::: gi|118 -APETRGPSEEVVRTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDE 260 270 280 290 300 310 270 280 290 300 310 320 KIAA02 AETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDP :::.::::::::::::::::::::::::::::::::::: . .::::::.:::: .::: gi|118 AETQKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPLATEGSREENQVGPEAPASDP 320 330 340 350 360 370 330 340 KIAA02 QDLDMKKHRCKCCSIM :::::::.:::::::: gi|118 QDLDMKKQRCKCCSIM 380 >>gi|22653923|sp|Q9Z0P4.1|PALM_MOUSE RecName: Full=Paral (383 aa) initn: 1784 init1: 1104 opt: 1794 Z-score: 1771.5 bits: 336.4 E(): 5.7e-90 Smith-Waterman score: 1794; 80.000% identity (92.174% similar) in 345 aa overlap (1-345:43-383) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :.:::::::::::::::::::::::::.:. gi|226 ERLQAIAEKRRKQAEIESKRRQLEDDRRQLQYLKSKALRERWLLEGTPSSASEGDEDMRK 20 30 40 50 60 70 40 50 60 70 80 90 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT :::.::::.: ::.:..::::::.::: :.::::..:::.::::: : . ::::::.:. gi|226 QMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSASPAKEEQKS 80 90 100 110 120 130 100 110 120 130 140 150 KIAA02 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT :...:.::::.::::..:.: ::.:. :: ::::::::::::::::::::::::::::: gi|226 ETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVTGETRVLSSTT 140 150 160 170 180 190 160 170 180 190 200 210 KIAA02 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG .:::.::: :.::::::::::::::: :::::.::::::::::::::::::::::::::: gi|226 VLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVTLSEAGSTAG 200 210 220 230 240 250 220 230 240 250 260 270 KIAA02 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA :: :: .: ..::::::::::::.:::::::::::::::::::::::.::::::::::: gi|226 PAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMGYQNVEDEA 260 270 280 290 300 310 280 290 300 310 320 330 KIAA02 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ :::::::::::: :::::::::: :.:::: :::::: : :..::::.:: .: :: : gi|226 ETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELP---ATKEENQTGPTTTPSDTQ 320 330 340 350 360 340 KIAA02 DLDMKKHRCKCCSIM :::::: ::.:::.: gi|226 DLDMKKPRCRCCSVM 370 380 >>gi|26331906|dbj|BAC29683.1| unnamed protein product [M (383 aa) initn: 1783 init1: 1104 opt: 1793 Z-score: 1770.5 bits: 336.2 E(): 6.5e-90 Smith-Waterman score: 1793; 80.000% identity (92.174% similar) in 345 aa overlap (1-345:43-383) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :.:::::::::::::::::::::::::.:. gi|263 ERLQAIAEKRRKQAEIESKRRQLEDDRRQLQYLKSKALRERWLLEGTPSSASEGDEDIRK 20 30 40 50 60 70 40 50 60 70 80 90 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT :::.::::.: ::.:..::::::.::: :.::::..:::.::::: : . ::::::.:. gi|263 QMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSASPAKEEQKS 80 90 100 110 120 130 100 110 120 130 140 150 KIAA02 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT :...:.::::.::::..:.: ::.:. :: ::::::::::::::::::::::::::::: gi|263 ETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVTGETRVLSSTT 140 150 160 170 180 190 160 170 180 190 200 210 KIAA02 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG .:::.::: :.::::::::::::::: :::::.::::::::::::::::::::::::::: gi|263 VLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVTLSEAGSTAG 200 210 220 230 240 250 220 230 240 250 260 270 KIAA02 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA :: :: .: ..::::::::::::.:::::::::::::::::::::::.::::::::::: gi|263 PAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMGYQNVEDEA 260 270 280 290 300 310 280 290 300 310 320 330 KIAA02 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ :::::::::::: :::::::::: :.:::: :::::: : :..::::.:: .: :: : gi|263 ETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELP---ATKEENQTGPTTTPSDTQ 320 330 340 350 360 340 KIAA02 DLDMKKHRCKCCSIM :::::: ::.:::.: gi|263 DLDMKKPRCRCCSVM 370 380 >>gi|15823744|dbj|BAB68565.1| paralemmin [Rattus norvegi (383 aa) initn: 1773 init1: 1090 opt: 1783 Z-score: 1760.6 bits: 334.4 E(): 2.3e-89 Smith-Waterman score: 1783; 79.130% identity (91.884% similar) in 345 aa overlap (1-345:43-383) 10 20 30 KIAA02 QHLKSKALRERWLLEGTPSSASEGDEDLRR :.:::::::::::::::::::::::::.:. gi|158 ERLQAIAEKRRKQAEIESKRRQLEDDRRQLQYLKSKALRERWLLEGTPSSASEGDEDMRK 20 30 40 50 60 70 40 50 60 70 80 90 KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT :::.::::.: ::.:..::::::.::: :.::::. :::.:::::.: . ::::::.:. gi|158 QMQEDEQKARSLEESITRLEKEIDVLEFGESAPAAPKENSAAPSPIRPHSTSPAKEEQKS 80 90 100 110 120 130 100 110 120 130 140 150 KIAA02 EVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTT :...:.::::.::::..: : ::.:. :: ::::::::::::::::::::::::::::: gi|158 ETMVNAQQTPLGTPKENRKS-TPVRSPGGSTMMKAAMYSVEITVEKDKVTGETRVLSSTT 140 150 160 170 180 190 160 170 180 190 200 210 KIAA02 LLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAG ::::.::: :.::::::::::::::: .::::.:::::::::::::::::::::::::.: gi|158 LLPRDPLPQGVKVYEDETKVVHAVDGLSENGIQPLSSSEVDELIHKADEVTLSEAGSTTG 200 210 220 230 240 250 220 230 240 250 260 270 KIAA02 AAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEA :: :: .: ..::::::::::::.:::::::::::::::::::::::.::::::::::: gi|158 PAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMGYQNVEDEA 260 270 280 290 300 310 280 290 300 310 320 330 KIAA02 ETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQ :::::::::::: ::::::::.. :.:::: :::::: : :..::::.:: .: :: : gi|158 ETKKVLGLQDTIKAELVVIEDSVTPREPAPLNGSAAELP---ATKEENQTGPTTTPSDTQ 320 330 340 350 360 340 KIAA02 DLDMKKHRCKCCSIM :::::: ::.:::.: gi|158 DLDMKKPRCRCCSVM 370 380 >>gi|221043494|dbj|BAH13424.1| unnamed protein product [ (252 aa) initn: 1638 init1: 1638 opt: 1638 Z-score: 1620.6 bits: 307.9 E(): 1.4e-81 Smith-Waterman score: 1638; 100.000% identity (100.000% similar) in 252 aa overlap (94-345:1-252) 70 80 90 100 110 120 KIAA02 ATAKENAAAPSPVRAPAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMM :::::::::::::::::::::::::::::: gi|221 MNSQQTPVGTPKDKRVSNTPLRTVDGSPMM 10 20 30 130 140 150 160 170 180 KIAA02 KAAMYSVEITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 KAAMYSVEITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIH 40 50 60 70 80 90 190 200 210 220 230 240 KIAA02 PLSSSEVDELIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 PLSSSEVDELIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATS 100 110 120 130 140 150 250 260 270 280 290 300 KIAA02 GPPGIQPGQEPPVTMIFMGYQNVEDEAETKKVLGLQDTITAELVVIEDAAEPKEPAPPNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 GPPGIQPGQEPPVTMIFMGYQNVEDEAETKKVLGLQDTITAELVVIEDAAEPKEPAPPNG 160 170 180 190 200 210 310 320 330 340 KIAA02 SAAEPPTEAASREENQAGPEATTSDPQDLDMKKHRCKCCSIM :::::::::::::::::::::::::::::::::::::::::: gi|221 SAAEPPTEAASREENQAGPEATTSDPQDLDMKKHRCKCCSIM 220 230 240 250 345 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 09:00:26 2009 done: Wed Mar 4 09:05:36 2009 Total Scan time: 1466.220 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]