# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha06636.fasta.huge -Q ../query/KIAA0270.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0270, 345 aa
 vs ./tmplib.23147 library

1987160 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.5109+/-0.00692; mu= -3.7891+/- 0.468
 mean_var=181.9840+/-44.933, 0's: 0 Z-trim: 1  B-trim: 101 in 2/38
 Lambda= 0.095073

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0920  ( 1134 res)   hh02592                    (1134)  234 43.8 5.1e-05


>>KIAA0920  ( 1134 res)   hh02592                         (1134 aa)
 initn: 250 init1: 212 opt: 234  Z-score: 181.9  bits: 43.8 E(): 5.1e-05
Smith-Waterman score: 234;  27.602% identity (57.466% similar) in 221 aa overlap (1-214:70-281)

                                             10        20        30
KIAA02                               QHLKSKALRERWLLEGTPSSASEGDEDLRR
                                     :: :::.:::.:::.: :....: .:  ::
KIAA09 ERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPAGTAEEEEARRR
      40        50        60        70        80        90         

               40        50        60        70        80        90
KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT
       : ..:: ... :::...:::.::..::  .:   .:::.      .        :  .  
KIAA09 QSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILEKLKETEKSFKDF
     100       110       120       130             140       150   

              100       110          120           130       140   
KIAA02 EVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYSVEITVEKDKVTGET
       .  ..: .  . .  .... . :.   ::.. :: .    .::  . : .. :.   ::.
KIAA09 QKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWENVLLKE---GES
           160       170       180       190       200          210

           150       160       170       180       190       200   
KIAA02 RVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLS
          .. :  : . .    .. ::.  .    :. . . ..: .::   .  .   ::...
KIAA09 ASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVA
              220       230       240       250       260       270

           210       220       230       240       250       260   
KIAA02 EAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGY
       :  :. : . :                                                 
KIAA09 ECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSA
              280       290       300       310       320       330




345 residues in 1 query   sequences
1987160 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:04 2008 done: Thu Dec 18 15:14:04 2008
 Total Scan time:  0.360 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]