hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22013616/chunk_1/iprscan-20080501-22013616.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0267
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00999.11.ls  Sodium/hydrogen exchanger family         343.0   4.7e-100   1
PF00999.11.fs  Sodium/hydrogen exchanger family         341.1    1.7e-99   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00999.11.fs    1/1      75   500 ..     1   450 []   341.1  1.7e-99
PF00999.11.ls    1/1      75   500 ..     1   450 []   343.0 4.7e-100

Alignments of top-scoring domains:
PF00999.11.fs: domain 1 of 1, from 75 to 500: score 341.1, E = 1.7e-99
                   *->avillvlallaglvfllarrlgplPpvvglilaGillGpsglglqim
                      +++l +++l ++l+++   r+  l+++ + +++G+l+G  +      
    KIAA0267    75    ILLLTLTILTIWLFKHRRARF--LHETGLAMIYGLLVGLVLRY---- 115  

                   mflpvepdlsl........kvealfpadveldlevlaelGlilLlFlaGl
                     ++v++d  +++ + + +++       v++d+ev+++++l++++F+aG+
    KIAA0267   116 -GIHVPSD--VnnvtlsceVQSSPTTLLVTFDPEVFFNILLPPIIFYAGY 162  

                   eldlrelrkngksilllallgvllpflliGlllallllglalfl.gllvl
                    l  r++++n++sil++a+lg+++++++iG +++  ++  ++  +g+l +
    KIAA0267   163 SLKRRHFFRNLGSILAYAFLGTAISCFVIGSIMY--GCVTLMKVtGQLAG 210  

                   gipllealffGaalsatspvvvlaiLkergrlntrlgtlilgesvlnDav
                   +++++++l+fGa++sat+pv+vlai+  +  ++ +l+ l++gesvlnDav
    KIAA0267   211 DFYFTDCLLFGAIVSATDPVTVLAIF-HELQVDVELYALLFGESVLNDAV 259  

                   avvlLavllala.segggevgglsdlglllliflvvalgglllglvfpwl
                   a+vl + ++a ++++  +++   +  +  + ifl ++ g+++ g++ + +
    KIAA0267   260 AIVLSSSIVAYQpAGDNSHTFDVTAMFKSIGIFLGIFSGSFAMGAATGVV 309  

                   lrlitrftdfrgydgdrelevllvlalallaallaellGlsgilGaFlaG
                   ++l+t+ft++r+    + le+ l++++++ ++llae++G+ g+++++++G
    KIAA0267   310 TALVTKFTKLRE---FQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCG 356  

                   lvlsrlnyafaneklseksrt.lepfgymlsglfiplFFvlvGlsldlsv
                   ++++  +y ++n  ls +s+++++++++ l +l++ ++F ++Gl l+   
    KIAA0267   357 ITQA--HYTYNN--LSTESQHrTKQLFELLNFLAENFIFSYMGLTLF--- 399  

                   llfdalgprgtss.hlsllllvllllvaillgKllgvfllarllnkFrrg
                             t+++h ++  +v+++ vai+lg++  +++l++lln+ rr 
    KIAA0267   400 ----------TFQnHVFNPTFVVGAFVAIFLGRAANIYPLSLLLNLGRRS 439  

                   klslrealivgllllqRGavalalaaiglqlgglidreliytllvivvll
                   k+++  ++++++++l RGa+a+ala +  ++    +r++++++++++v++
    KIAA0267   440 KIGSNFQHMMMFAGL-RGAMAFALAIRDTAT---YARQMMFSTTLLIVFF 485  

                   ttlvqGltlkpllkk<-*
                   t++v+G+ ++++l +   
    KIAA0267   486 TVWVFGGGTTAMLSC    500  

PF00999.11.ls: domain 1 of 1, from 75 to 500: score 343.0, E = 4.7e-100
                   *->avillvlallaglvfllarrlgplPpvvglilaGillGpsglglqim
                      +++l +++l ++l+++   r+  l+++ + +++G+l+G  +      
    KIAA0267    75    ILLLTLTILTIWLFKHRRARF--LHETGLAMIYGLLVGLVLRY---- 115  

                   mflpvepdlsl........kvealfpadveldlevlaelGlilLlFlaGl
                     ++v++d  +++ + + +++       v++d+ev+++++l++++F+aG+
    KIAA0267   116 -GIHVPSD--VnnvtlsceVQSSPTTLLVTFDPEVFFNILLPPIIFYAGY 162  

                   eldlrelrkngksilllallgvllpflliGlllallllglalfl.gllvl
                    l  r++++n++sil++a+lg+++++++iG +++  ++  ++  +g+l +
    KIAA0267   163 SLKRRHFFRNLGSILAYAFLGTAISCFVIGSIMY--GCVTLMKVtGQLAG 210  

                   gipllealffGaalsatspvvvlaiLkergrlntrlgtlilgesvlnDav
                   +++++++l+fGa++sat+pv+vlai+  +  ++ +l+ l++gesvlnDav
    KIAA0267   211 DFYFTDCLLFGAIVSATDPVTVLAIF-HELQVDVELYALLFGESVLNDAV 259  

                   avvlLavllala.segggevgglsdlglllliflvvalgglllglvfpwl
                   a+vl + ++a ++++  +++   +  +  + ifl ++ g+++ g++ + +
    KIAA0267   260 AIVLSSSIVAYQpAGDNSHTFDVTAMFKSIGIFLGIFSGSFAMGAATGVV 309  

                   lrlitrftdfrgydgdrelevllvlalallaallaellGlsgilGaFlaG
                   ++l+t+ft++r+    + le+ l++++++ ++llae++G+ g+++++++G
    KIAA0267   310 TALVTKFTKLRE---FQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCG 356  

                   lvlsrlnyafaneklseksrt.lepfgymlsglfiplFFvlvGlsldlsv
                   ++++  +y ++n  ls +s+++++++++ l +l++ ++F ++Gl l+   
    KIAA0267   357 ITQA--HYTYNN--LSTESQHrTKQLFELLNFLAENFIFSYMGLTLF--- 399  

                   llfdalgprgtss.hlsllllvllllvaillgKllgvfllarllnkFrrg
                             t+++h ++  +v+++ vai+lg++  +++l++lln+ rr 
    KIAA0267   400 ----------TFQnHVFNPTFVVGAFVAIFLGRAANIYPLSLLLNLGRRS 439  

                   klslrealivgllllqRGavalalaaiglqlgglidreliytllvivvll
                   k+++  ++++++++l RGa+a+ala +  ++    +r++++++++++v++
    KIAA0267   440 KIGSNFQHMMMFAGL-RGAMAFALAIRDTAT---YARQMMFSTTLLIVFF 485  

                   ttlvqGltlkpllkk<-*
                   t++v+G+ ++++l +   
    KIAA0267   486 TVWVFGGGTTAMLSC    500  

//