hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21582333/chunk_1/iprscan-20080501-21582333.nocrc
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Query sequence: KIAA0265
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                  34.5    1.5e-05   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00612      1/2     230   285 ..     1    55 []     5.9      4.5
SM00612      2/2     286   333 ..     1    55 []    28.5  0.00089

Alignments of top-scoring domains:
SM00612: domain 1 of 2, from 230 to 285: score 5.9, E = 4.5
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvps.......
                      +iY+ GG    t      + +l+++  Y++etn W++++ +++++ +
    KIAA0265   230    RIYILGGGTSWT------AYSLNKIHAYNLETNAWEEIATkphekig 270  

                   MptpRsgagvaving<-*
                    p +R  ++++ i++   
    KIAA0265   271 FPAARRCHSCVQIKN    285  

SM00612: domain 2 of 2, from 286 to 333: score 28.5, E = 0.00089
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvp.sMptpRs
                       ++++GG++g         ++l  ++++++ t +W  +p  Mp p +
    KIAA0265   286    DVFICGGYNG--------EVILGDIWKLNLQTFQWVKLPaTMPEPVY 324  

                   gagvaving<-*
                    +++av+     
    KIAA0265   325 FHCAAVTPA    333  

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