hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21582333/chunk_1/iprscan-20080501-21582333.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0265 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 150.6 3.7e-42 5 PF01344.15.fs Kelch motif 140.6 3.9e-39 5 PF07646.5.ls Kelch motif 106.7 6.3e-29 5 PF07646.5.fs Kelch motif 97.1 4.8e-26 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01344.15.fs 1/5 50 107 .. 1 45 [] 27.8 4.6e-07 PF01344.15.ls 1/5 50 107 .. 1 45 [] 29.8 8.9e-06 PF07646.5.fs 1/5 50 107 .. 1 54 [] 15.8 0.002 PF07646.5.ls 1/5 50 107 .. 1 54 [] 17.8 0.037 PF07646.5.ls 2/5 112 160 .. 1 54 [] 16.0 0.13 PF01344.15.fs 3/5 165 210 .. 1 45 [] 32.1 2.8e-08 PF07646.5.fs 3/5 165 210 .. 1 54 [] 23.3 1.7e-05 PF01344.15.ls 3/5 165 210 .. 1 45 [] 34.1 4.5e-07 PF07646.5.ls 3/5 165 210 .. 1 54 [] 25.2 0.00022 PF01344.15.ls 4/5 218 265 .. 1 45 [] 38.5 2.2e-08 PF01344.15.fs 4/5 218 265 .. 1 45 [] 36.5 1.6e-09 PF07646.5.ls 4/5 218 265 .. 1 54 [] 16.3 0.1 PF01344.15.ls 5/5 274 319 .. 1 45 [] 41.7 2.4e-09 PF07646.5.ls 5/5 274 319 .. 1 54 [] 31.5 2.8e-06 PF07646.5.fs 5/5 274 319 .. 1 54 [] 29.6 3.5e-07 PF01344.15.fs 5/5 274 319 .. 1 45 [] 39.7 1.9e-10 Alignments of top-scoring domains: PF01344.15.fs: domain 1 of 5, from 50 to 107: score 27.8, E = 4.6e-07 *->pRsgagvvvldgkiYviGGydg.............qslnsvevYDpe +Rsg+ +v+ + +Yv+GGy+++ ++++++++++ ++ ++Y+ KIAA0265 50 ARSGHRCVADNTNLYVFGGYNPdydesggpdnedyPLFRELWRYHFA 96 tntWtklpsmp<-* t+ W+++ + + KIAA0265 97 TGVWHQMGTDG 107 PF01344.15.ls: domain 1 of 5, from 50 to 107: score 29.8, E = 8.9e-06 *->pRsgagvvvldgkiYviGGydg.............qslnsvevYDpe +Rsg+ +v+ + +Yv+GGy+++ ++++++++++ ++ ++Y+ KIAA0265 50 ARSGHRCVADNTNLYVFGGYNPdydesggpdnedyPLFRELWRYHFA 96 tntWtklpsmp<-* t+ W+++ + + KIAA0265 97 TGVWHQMGTDG 107 PF07646.5.fs: domain 1 of 5, from 50 to 107: score 15.8, E = 0.002 *->pryphasvvpggklyvvGGs..fkgnrgtgngdes..ssdllvldpe r++h +v + lyv+GG++++ ++g++++ +++ ++ l+++++ KIAA0265 50 ARSGHRCVADNTNLYVFGGYnpDYDESGGPDNEDYplFRELWRYHFA 96 tnvWeklpalp<-* t vW+ + ++ KIAA0265 97 TGVWHQMGTDG 107 PF07646.5.ls: domain 1 of 5, from 50 to 107: score 17.8, E = 0.037 *->pryphasvvpggklyvvGGs..fkgnrgtgngdes..ssdllvldpe r++h +v + lyv+GG++++ ++g++++ +++ ++ l+++++ KIAA0265 50 ARSGHRCVADNTNLYVFGGYnpDYDESGGPDNEDYplFRELWRYHFA 96 tnvWeklpalp<-* t vW+ + ++ KIAA0265 97 TGVWHQMGTDG 107 PF07646.5.ls: domain 2 of 5, from 112 to 160: score 16.0, E = 0.13 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++++++v+ g+ l+v+GG g + g + +d++v++ + ++W KIAA0265 112 ELASMSLVLHGNNLLVFGGT-----GIPFGESNGNDVHVCNVKYKRW 153 eklpalp<-* l++ + KIAA0265 154 ALLSCRG 160 PF01344.15.fs: domain 3 of 5, from 165 to 210: score 32.1, E = 2.8e-08 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< + +g +++ ++g +Yv+GG +g ++ + ++D+ t +Wt+l + + KIAA0265 165 RIYGQAMAIINGSLYVFGGTTGyIYSTDLHKLDLNTREWTQLKPNN 210 -* KIAA0265 - - PF07646.5.fs: domain 3 of 5, from 165 to 210: score 23.3, E = 1.7e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW + y++a++ ++g lyv+GG g +s dl+ ld++t++W KIAA0265 165 RIYGQAMAIINGSLYVFGGT--------TGYIYSTDLHKLDLNTREW 203 eklpalp<-* + l++ KIAA0265 204 TQLKPNN 210 PF01344.15.ls: domain 3 of 5, from 165 to 210: score 34.1, E = 4.5e-07 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< + +g +++ ++g +Yv+GG +g ++ + ++D+ t +Wt+l + + KIAA0265 165 RIYGQAMAIINGSLYVFGGTTGyIYSTDLHKLDLNTREWTQLKPNN 210 -* KIAA0265 - - PF07646.5.ls: domain 3 of 5, from 165 to 210: score 25.2, E = 0.00022 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW + y++a++ ++g lyv+GG g +s dl+ ld++t++W KIAA0265 165 RIYGQAMAIINGSLYVFGGT--------TGYIYSTDLHKLDLNTREW 203 eklpalp<-* + l++ KIAA0265 204 TQLKPNN 210 PF01344.15.ls: domain 4 of 5, from 218 to 265: score 38.5, E = 2.2e-08 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R+++ ++ + +iY+ GG ++ + sln++ +Y++etn W+++++ KIAA0265 218 ERYRHEIAHDGQRIYILGGGTSwtaYSLNKIHAYNLETNAWEEIATK 264 p<-* p KIAA0265 265 P 265 PF01344.15.fs: domain 4 of 5, from 218 to 265: score 36.5, E = 1.6e-09 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R+++ ++ + +iY+ GG ++ + sln++ +Y++etn W+++++ KIAA0265 218 ERYRHEIAHDGQRIYILGGGTSwtaYSLNKIHAYNLETNAWEEIATK 264 p<-* p KIAA0265 265 P 265 PF07646.5.ls: domain 4 of 5, from 218 to 265: score 16.3, E = 0.1 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ry+h ++ g+++y+ GG t + s+++++ +++etn+W KIAA0265 218 ERYRHEIAHDGQRIYILGGG------TSWTAYSLNKIHAYNLETNAW 258 eklpalp<-* e+++ p KIAA0265 259 EEIATKP 265 PF01344.15.ls: domain 5 of 5, from 274 to 319: score 41.7, E = 2.4e-09 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++++v +++ ++++GGy+g+++l +++++++ t +W klp + KIAA0265 274 ARRCHSCVQIKNDVFICGGYNGeVILGDIWKLNLQTFQWVKLPATM 319 -* KIAA0265 - - PF07646.5.ls: domain 5 of 5, from 274 to 319: score 31.5, E = 2.8e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r +h++v + + ++++GG+ ng + d++ l+++t +W KIAA0265 274 ARRCHSCVQIKNDVFICGGY--------NGEVILGDIWKLNLQTFQW 312 eklpalp<-* klpa KIAA0265 313 VKLPATM 319 PF07646.5.fs: domain 5 of 5, from 274 to 319: score 29.6, E = 3.5e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r +h++v + + ++++GG+ ng + d++ l+++t +W KIAA0265 274 ARRCHSCVQIKNDVFICGGY--------NGEVILGDIWKLNLQTFQW 312 eklpalp<-* klpa KIAA0265 313 VKLPATM 319 PF01344.15.fs: domain 5 of 5, from 274 to 319: score 39.7, E = 1.9e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++++v +++ ++++GGy+g+++l +++++++ t +W klp + KIAA0265 274 ARRCHSCVQIKNDVFICGGYNGeVILGDIWKLNLQTFQWVKLPATM 319 -* KIAA0265 - - //