# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha04704.fasta.huge -Q ../query/KIAA0265.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0265, 401 aa vs ./tmplib.23147 library 1987104 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.3930+/-0.00561; mu= 24.0379+/- 0.384 mean_var=109.4259+/-25.637, 0's: 0 Z-trim: 11 B-trim: 0 in 0/40 Lambda= 0.122607 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0534 ( 1028 res) hg03820s1 (1028) 215 49.1 1.4e-06 KIAA1332 ( 651 res) fh15405 ( 651) 208 47.5 2.7e-06 KIAA1309 ( 639 res) fh10381 ( 639) 192 44.6 1.9e-05 KIAA1354 ( 632 res) fj01502 ( 632) 181 42.7 7.3e-05 KIAA1384 ( 652 res) fj06146 ( 652) 173 41.3 0.0002 KIAA0817 ( 2785 res) hg01392s2 (2785) 164 40.9 0.0011 >>KIAA0534 ( 1028 res) hg03820s1 (1028 aa) initn: 143 init1: 67 opt: 215 Z-score: 210.1 bits: 49.1 E(): 1.4e-06 Smith-Waterman score: 215; 25.275% identity (52.381% similar) in 273 aa overlap (48-302:1-256) 20 30 40 50 60 70 KIAA02 LRQSLAGHVGRPGRGQWGQRGSGDLPGHRPPPARSGHRCVADNTNLYVFGGYNPDYDESG : : :: . . :....:: : . KIAA05 PLQRYGHSLALYQENIFMYGGRIETNDGNV 10 20 30 80 90 100 110 120 130 KIAA02 GPDNEDYPLFRELWRYHFATGVWH--QMGTDGYMPR--ELASMSLVLHGNNLLVFGGTGI . . . . : . : . : :....:. . :: : ..:. ...:: ..: KIAA05 TDELWVFNIHSQSWSTKTPTVLGHGQQYAVEGHSAHIMELDSRDVVM----IIIFGYSAI 40 50 60 70 80 140 150 160 170 180 KIAA02 PFGESNGNDVHVCNVKYKRWALLSCRGKKPSRIYGQAMAI--INGSLYVFGG---TTGYI :. .. :. . . : . .: . ::.. . :. :.:: :: : KIAA05 YGYTSSIQEYHISS---NTWLVPETKGAIVQGGYGHTSVYDEITKSIYVHGGYKALPGNK 90 100 110 120 130 140 190 200 210 220 230 240 KIAA02 YST--DLHKLDLNTREWTQLKPNNLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLN :. ::.: ..::. :: :: .... :: : . . . :.::.: . : KIAA05 YGLVDDLYKYEVNTKTWTILKESGFA------RYLHSAVLINGAMLIFGGNTHNDTSLSN 150 160 170 180 190 250 260 270 280 290 KIAA02 KIH-------AYNLETNAWEEIATKPHEKIGFPAARRCHSCVQIKNDVFICGGYNGEVIL . ::.. . :. : ::. . . : :: : :.....: ::... :.: KIAA05 GAKCFSADFLAYDIACDEWK-ILPKPN--LHRDVNRFGHSAVVINGSMYIFGGFSS-VLL 200 210 220 230 240 250 300 310 320 330 340 350 KIAA02 GDIWKLNLQTFQWVKLPATMPEPVYFHCAAVTPAGCMYIHGGVVNIHENKRTGSLFKIWL .:: KIAA05 NDILVYKPPNCKAFRDEELCKNAGPGIKCVWNKNHCESWESGNTNNILRAKCPPKTAASD 260 270 280 290 300 310 >>KIAA1332 ( 651 res) fh15405 (651 aa) initn: 170 init1: 94 opt: 208 Z-score: 204.8 bits: 47.5 E(): 2.7e-06 Smith-Waterman score: 249; 26.374% identity (53.480% similar) in 273 aa overlap (30-289:34-287) 10 20 30 40 50 KIAA02 QEGGSAGSAGSGADGTGLRQSLAGHVGRPGRGQWGQRGSGDLPGHRPPPARSGHR-CVA : :: .: . :: : : .: : KIAA13 TAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESR-TYPYPG-TPITQRFSHSACYY 10 20 30 40 50 60 60 70 80 90 100 110 KIAA02 D-NTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQMGTDGYMPRELASMS : : ..::::: . . ... : .::: . . : . ..: .: :. . KIAA13 DANQSMYVFGGCTQSSCNAA---------FNDLWRLDLNSKEWIRPLASGSYPSPKAGAT 70 80 90 100 110 120 130 140 150 160 170 KIAA02 LVLHGNNLLVFGG----TGIPFGESNG--NDVHVCNVKYKRWA-LLSCRGKKPSRIYGQA ::.. . :..::: . :. . . ...:. . . . : ... .: : . :.. KIAA13 LVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPP--MAGHS 120 130 140 150 160 170 180 190 200 210 220 KIAA02 MAIINGSLYVFGGTTG-YIYSTDLHKLDLNTREWTQLKPNNLSCDLPEERY-RHEIAHDG .:. .. ::::. : .:.:. :::. .:. ::: .: :. : . .:. : KIAA13 SCVIDDKMIVFGGSLGSRQMSNDVWVLDLE--QWAWSKPN-ISGPSPHPRGGQSQIVIDD 180 190 200 210 220 230 240 250 260 270 280 KIAA02 QRIYILGGGTSWTAYSLNK--IHAYNLETNAWEEIATKPHEKIGFPAARRCHSCVQIKND : :::: . .: . .: .. ::. . .. .:. : : :: .. . KIAA13 ATILILGGCGGPNALFKDAWLLHMHS-GPWAWQPLKVENEEH-GAPELW-CHPACRVGQC 230 240 250 260 270 280 290 300 310 320 330 340 KIAA02 VFICGGYNGEVILGDIWKLNLQTFQWVKLPATMPEPVYFHCAAVTPAGCMYIHGGVVNIH : . KIAA13 VVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGT 290 300 310 320 330 340 >>KIAA1309 ( 639 res) fh10381 (639 aa) initn: 90 init1: 64 opt: 192 Z-score: 189.6 bits: 44.6 E(): 1.9e-05 Smith-Waterman score: 192; 27.326% identity (56.395% similar) in 172 aa overlap (178-344:326-482) 150 160 170 180 190 200 KIAA02 VKYKRWALLSCRGKKPSRIYGQAMAIINGSLYVFGGTT--GYIYSTDLHKLDLNTREWTQ : ..::. . : .:. : ...:: . KIAA13 LLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKS 300 310 320 330 340 350 210 220 230 240 250 260 KIAA02 LKPNNLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAY---SLNKIHAYNLETNAWEEIA : : : : ::.: :: :. .:..:: ... . ... . .. . : : ..: KIAA13 LAP----MDAP--RYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVA 360 370 380 390 400 270 280 290 300 310 320 KIAA02 TKPHEKIGFPAARRCHSCVQIKNDVFICGGYNGEVILGDIWKLNLQTFQWVKLPATMPEP . ... : : . .:. .. :: :. : . : .: .:. . : : :: KIAA13 SLNEKRTFF------HLSA-LKGYLYAVGGRNAAGELPTVECYNPRTNEWTYV-AKMSEP 410 420 430 440 450 460 330 340 350 360 370 380 KIAA02 VYFHCAAVTPAGCMYIHGGVVNIHENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNLANL : : :... .: ::: ::... KIAA13 HYGH-AGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGER 470 480 490 500 510 520 >>KIAA1354 ( 632 res) fj01502 (632 aa) initn: 90 init1: 64 opt: 181 Z-score: 179.1 bits: 42.7 E(): 7.3e-05 Smith-Waterman score: 186; 25.472% identity (50.629% similar) in 318 aa overlap (15-321:319-597) 10 20 30 40 KIAA02 QEGGSAGSAGSGADGTGLRQSLAGHVGRPGR--GQWGQRGSGDL : :::.:. :.. : . .:. . KIAA13 SNYQMMPYMQPVMQSDRTAIRSDSTHLVTLGGVLRQQLV--VSKELRMYDERAQEWRSLA 290 300 310 320 330 340 50 60 70 80 90 100 KIAA02 PGHRPPPARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQ : : : : .. .. ::: :: . .:: .: . .:: ::. : : KIAA13 PMDAP---RYQHGIAVIGNFLYVVGGQS-NYDTKGKTAVDT--VFRFDPRYN----KWMQ 350 360 370 380 390 110 120 130 140 150 160 KIAA02 MGTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLSCRGKK ... . : . .: .:.:. : . :: . :: :. : ....:. .. . .. KIAA13 VASLNE-KRTFFHLS-ALKGH-LYAVGGRSAA-GELA--TVECYNPRMNEWSYVA-KMSE 400 410 420 430 440 170 180 190 200 210 220 KIAA02 PSRIYGQAMAIINGSLYVFGGTTGYIYSTDLHKLDLNTREWTQLKPNNLSCDLPEERYRH : ::.: .. .: .:. :: : ....: .: .: .: : : . : : KIAA13 PH--YGHAGTVYGGLMYISGGITHDTFQNELMCFDPDTDKWMQKAP------MTTVRGLH 450 460 470 480 490 500 230 240 250 260 270 KIAA02 EIAHDGQRIYILGG----GTSWTAYSLNKIHAYNLETNAWEEIATKPHEKIGFPAARRCH . :...:..:: ::: :. . :. . : :: : : . KIAA13 CMCTVGDKLYVIGGNHFRGTSDYDDVLS-CEYYSPTLDQWTPIA----------AMLRGQ 510 520 530 540 550 280 290 300 310 320 330 KIAA02 SCVQI---KNDVFICGGY--NGEVILGDIWKLNLQTFQWVKLPATMPEPVYFHCAAVTPA : : . .: ... ::: :.. .. . : . . .: :. .:: KIAA13 SDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPEKDEWHKV-FDLPESLGGIRACTLTV 560 570 580 590 600 340 350 360 370 380 390 KIAA02 GCMYIHGGVVNIHENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNLANLSRTQLLHLGLT KIAA13 FPPEENPGSPSRESPLSAPSDHS 610 620 630 >>KIAA1384 ( 652 res) fj06146 (652 aa) initn: 135 init1: 65 opt: 173 Z-score: 171.4 bits: 41.3 E(): 0.0002 Smith-Waterman score: 185; 22.148% identity (52.685% similar) in 298 aa overlap (49-336:383-648) 20 30 40 50 60 70 KIAA02 RQSLAGHVGRPGRGQWGQRGSGDLPGHRPPPARSGHRCVADNTN-LYVFGGYNPDYDESG : :.:.::.. : :.:.:: ... KIAA13 GLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGG-----EDQW 360 370 380 390 400 80 90 100 110 120 130 KIAA02 GPDNEDYPLFRELWRYHFATGVWHQMGTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGE .:... : . :: . : :. : .. ::. ..: :.:: . : KIAA13 NPNGKHSTNF--VSRYDPRFNSWIQLPP---MQERRASFYACRLDKHLYVIGGRN----E 410 420 430 440 450 140 150 160 170 180 190 KIAA02 SNG-NDVHVCNVKYKRWALLSCRGKKPSRIYGQAMAIINGSLYVFGGTTGYIYSTDLHKL .. ..:. :.. ..: .: . :. . ..: :. ::..:. ::. . : :. KIAA13 TGYLSSVECYNLETNEWRYVS---SLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCY 460 470 480 490 500 510 200 210 220 230 240 250 KIAA02 DLNTREWTQLKPNNLSCDLPEERYRHEIAHDGQRIYILGGG--TSWTAYSLNKIHAYNLE : :.. . :. .: : .: ..:.: .::. ... .. .. :. . KIAA13 DPVMDVWARKQ------DMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPK 520 530 540 550 560 260 270 280 290 300 310 KIAA02 TNAWEEIATKPHEKIGFPAARRCHSCVQIKNDVFICGGYNGEVILGDIWKLNLQTF---- . :. . : : .: .:. . ..... :::. .: .: . . KIAA13 GDQWNILQTPILE------GRSGPGCAVLDDSIYLVGGYSWS--MG-AYKSSTICYCPEK 570 580 590 600 610 620 320 330 340 350 360 KIAA02 -QWVKLPATMPEPVYFH-CAAVTPAGCMYIHGGVVNIHENKRTGSLFKIWLVVPSLLELA :..: . . ::. :..: .:. KIAA13 GTWTELEGDVAEPLAGPACVTVILPSCVPYNK 630 640 650 >>KIAA0817 ( 2785 res) hg01392s2 (2785 aa) initn: 181 init1: 78 opt: 164 Z-score: 158.1 bits: 40.9 E(): 0.0011 Smith-Waterman score: 227; 25.223% identity (49.258% similar) in 337 aa overlap (33-352:1545-1849) 10 20 30 40 50 60 KIAA02 GGSAGSAGSGADGTGLRQSLAGHVGRPGRGQWGQRGSGDLPGHRPPPARSGHRCVAD-NT :: :. . : :: .:: .: . KIAA08 PAGRGAMYLLGGLTAGGVTRDFWVLNLTTLQWRQEKA---PQTVELPAVAGHTLTARRGL 1520 1530 1540 1550 1560 1570 70 80 90 100 110 120 KIAA02 NLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQMGTDGYMPRELASMSLVLH .: . :::.: :.: . ..: .:..:::.: . . .: : : . : : : KIAA08 SLLLVGGYSP---ENG--------FNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYH 1580 1590 1600 1610 1620 130 140 150 160 170 KIAA02 --GNNLLVFGGTGIPFGESNGN-DVHVCNVKYKRWALLS-CRGKKPSRIYGQAMAIINGS ..: :::: . . . ... . . :.::. .: : .: : . :: KIAA08 EATDSLYVFGGFRFHVELAAPSPELYSLHCPDRTWSLLAPSQGAKRDR-----MRNVRGS 1630 1640 1650 1660 1670 180 190 200 210 220 KIAA02 LYVFGGTTG-YIYSTDLHKLDLNTREWTQLKPNN-----LSCDLPEERYR--HEIAHDGQ .: . : : .... . :. : .. .: : : : : : : :. KIAA08 SRGLGQVPGEQPGSWGFREVRKKMALWAALAGTGGFLEEISPHLKEPRPRLFHASALLGD 1680 1690 1700 1710 1720 1730 230 240 250 260 270 280 KIAA02 RIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHEKIGFPAARRC-HSCVQIKNDVF . .::: .. .: . . :... ::: ..: : . :. . . . .. KIAA08 TMVVLGGRSDPDEFS-SDVLLYQVNCNAWLLPDLTRSASVGPPMEESVAHAVAAVGSRLY 1740 1750 1760 1770 1780 1790 290 300 310 320 330 340 KIAA02 ICGGYNGEVILGDIWKLNLQTFQWVKLPATMPEPVYFHCA--AVTPAG-CMYIHGGVVNI : ::..: : :: . :.: : :.: . . : . .: : . ::. .. KIAA08 ISGGFGG-VALGRLLALTL--------P---PDPCRLLSSPEACNQSGACTWCHGACLSG 1800 1810 1820 1830 1840 350 360 370 380 390 400 KIAA02 HENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNLANLSRTQLLHLGLTQGLIERLK . .: : KIAA08 DQAHRLGCGGSPCSPMPRSPEECRRLRTCSECLARHPRTLQPGDGEASTPRCKWCTNCPE 1850 1860 1870 1880 1890 1900 401 residues in 1 query sequences 1987104 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:53 2008 done: Thu Dec 18 15:13:54 2008 Total Scan time: 0.390 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]