hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21501548/chunk_1/iprscan-20080501-21501548.nocrc
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Query sequence: KIAA0260
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03151.7.fs Triose-phosphate Transporter family             21.4    1.8e-05   1
PF03151.7.ls Triose-phosphate Transporter family             16.9    5.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03151.7.ls   1/1     189   357 ..     1   164 []    16.9  5.2e-05
PF03151.7.fs   1/1     275   357 ..    57   164 .]    21.4  1.8e-05

Alignments of top-scoring domains:
PF03151.7.ls: domain 1 of 1, from 189 to 357: score 16.9, E = 5.2e-05
                   *->GfilalaasalfaLrlilsqkllkkkl....................
                      G+ ++++a+++ a+    s + +  ++      ++  +  ++   ++
    KIAA0260   189    GIKMTVFAMIIGAFVAASSDLAFDLEGyafilindvltaangayvkq 235  

                   .kkgtklnplellyylspvafivllpgllfvEgfklgksglkfkgsdlse
                   + +++ l +  llyy ++ + + +l  + f ++ +  +++  +++     
    KIAA0260   236 kLDSKELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWAD----- 280  

                   EmeFkkGktqryvlllllsgvlafllnlsaflllgrtSplTlsVagtvKr
                           t +++l + ls+v  f+l   ++l+    S+lT +++g++K 
    KIAA0260   281 --------T-LFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKN 321  

                   vvvivlsviiFgFmDdp.vtplnilGlaiAlaGvvlYsy<-*
                   +++  ++ ++ g   d  +t++n +Gl i +aG + Ysy   
    KIAA0260   322 ILITYIGMVFGG---DYiFTWTNFIGLNISIAGSLVYSY    357  

PF03151.7.fs: domain 1 of 1, from 275 to 357: score 21.4, E = 1.8e-05
                   *->vEgfklgksglkfkgsdlseEmeFkkGktqryvlllllsgvlaflln
                      +Eg++                       +++++l + ls+v  f+l 
    KIAA0260   275    FEGWA-----------------------DTLFLLQFTLSCVMGFILM 298  

                   lsaflllgrtSplTlsVagtvKrvvvivlsviiFgFmDdp.vtplnilGl
                     ++l+    S+lT +++g++K +++  ++ ++ g   d  +t++n +Gl
    KIAA0260   299 YATVLCTQYNSALTTTIVGCIKNILITYIGMVFGG---DYiFTWTNFIGL 345  

                   aiAlaGvvlYsy<-*
                    i +aG + Ysy   
    KIAA0260   346 NISIAGSLVYSY    357  

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