hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21465679/chunk_1/iprscan-20080501-21465679.nocrc
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Query sequence: KIAA0258
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08737.1.ls Rgp1                                           401.6     1e-117   1
PF08737.1.fs Rgp1                                           400.0   3.2e-117   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08737.1.fs   1/1      59   351 ..     1   569 []   400.0 3.2e-117
PF08737.1.ls   1/1      59   351 ..     1   569 []   401.6   1e-117

Alignments of top-scoring domains:
PF08737.1.fs: domain 1 of 1, from 59 to 351: score 400.0, E = 3.2e-117
                   *->etLlwgYaQihGqfvldeslinlskfeevkrkglhvvggqgnleyas
                      e L+w++aQih+qf+++es+++l++ ++++ ++              
    KIAA0258    59    EALAWASAQIHCQFHASESRVALPPPDSSQPDV-------------- 91   

                   qlgssnevkssrsdtklllsflwniiensissllgsselggvkdLVmNdk
                                                  +  +++++ ++++      
    KIAA0258    92 -------------------------------QPDSQTVFLPHRG------ 104  

                   IiddRYLLqDLlfnFSrgvsstlqdidektvlelreltekglPllsTpqs
                                                         e+g+++lsTp++
    KIAA0258   105 --------------------------------------ERGQCILSTPPK 116  

                   LLFvDLrLaPGEsKtFsfkSftLPkdLPPSYrGkatGvCDQGlvkisYkL
                   +LF+DLrL+PGEsK++s++ + LP+++PPS+rG++        vk++YkL
    KIAA0258   117 ILFCDLRLDPGESKSYSYS-EVLPIEGPPSFRGQS--------VKYVYKL 157  

                   vvGtqratdnacvedelaggaviqkvqlltvPirVlgpyvnsqgeqlghd
                   ++G+qr               v++++ ll+vP+rVl              
    KIAA0258   158 TIGCQR---------------VNSPITLLRVPLRVL-------------- 178  

                   LdkPiiilkdeavvevvgessetlsekrlstsgqipreRrksnksvqsii
                       ++   ++++ ++++ ++                             
    KIAA0258   179 ----VLTGLQDVRFPQDEAVA----------------------------- 195  

                   kpvetsEsleaskknFleyvsdllesdldedlidkllgvqfgkdesssds
                                                                     
    KIAA0258     - -------------------------------------------------- -    

                   dpselsesfeeiellepvlpsnpfsergkssskdasdlellrqyNveSlV
                                      ps pf+e++ +++kd++ +el++        
    KIAA0258   196 -------------------PSSPFLEEDEGGKKDSWLAELAG-------- 218  

                   snvlillqkrslktryeIsrngkrvatlsLsKpaYrlGEdivgtidfsdg
                   + +++  +++++ + y+Is ++++v+t++++K++YrlGEd+vgt+++ +g
    KIAA0258   219 ERLMA-ATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEG 267  

                   dtpripctqvsvsLEtfEWdsLlsgyvesenGkvnpsyavrssassnrpt
                   +   + c+q+svsL+t+E              +v+p+y++r++a++  ++
    KIAA0258   268 T---VACLQFSVSLQTEE--------------RVQPEYQRRRGAGGVPSV 300  

                   rStlgsrdpempkpskvkvhaehheicldsrdrvsfsLpIPstatPtFiT
                   +               + +ha+h e+cl+++ r+sfsLpIP+++tP+F+T
    KIAA0258   301 S---------------HVTHARHQESCLHTT-RTSFSLPIPLSSTPGFCT 334  

                   sqvktdiFqlkWrLrFeFVtss<-*
                   ++v+     lkWrL+FeFVts+   
    KIAA0258   335 AIVS-----LKWRLHFEFVTSR    351  

PF08737.1.ls: domain 1 of 1, from 59 to 351: score 401.6, E = 1e-117
                   *->etLlwgYaQihGqfvldeslinlskfeevkrkglhvvggqgnleyas
                      e L+w++aQih+qf+++es+++l++ ++++ ++              
    KIAA0258    59    EALAWASAQIHCQFHASESRVALPPPDSSQPDV-------------- 91   

                   qlgssnevkssrsdtklllsflwniiensissllgsselggvkdLVmNdk
                                                  +  +++++ ++++      
    KIAA0258    92 -------------------------------QPDSQTVFLPHRG------ 104  

                   IiddRYLLqDLlfnFSrgvsstlqdidektvlelreltekglPllsTpqs
                                                         e+g+++lsTp++
    KIAA0258   105 --------------------------------------ERGQCILSTPPK 116  

                   LLFvDLrLaPGEsKtFsfkSftLPkdLPPSYrGkatGvCDQGlvkisYkL
                   +LF+DLrL+PGEsK++s++ + LP+++PPS+rG++        vk++YkL
    KIAA0258   117 ILFCDLRLDPGESKSYSYS-EVLPIEGPPSFRGQS--------VKYVYKL 157  

                   vvGtqratdnacvedelaggaviqkvqlltvPirVlgpyvnsqgeqlghd
                   ++G+qr               v++++ ll+vP+rVl              
    KIAA0258   158 TIGCQR---------------VNSPITLLRVPLRVL-------------- 178  

                   LdkPiiilkdeavvevvgessetlsekrlstsgqipreRrksnksvqsii
                       ++   ++++ ++++ ++                             
    KIAA0258   179 ----VLTGLQDVRFPQDEAVA----------------------------- 195  

                   kpvetsEsleaskknFleyvsdllesdldedlidkllgvqfgkdesssds
                                                                     
    KIAA0258     - -------------------------------------------------- -    

                   dpselsesfeeiellepvlpsnpfsergkssskdasdlellrqyNveSlV
                                      ps pf+e++ +++kd++ +el++        
    KIAA0258   196 -------------------PSSPFLEEDEGGKKDSWLAELAG-------- 218  

                   snvlillqkrslktryeIsrngkrvatlsLsKpaYrlGEdivgtidfsdg
                   + +++  +++++ + y+Is ++++v+t++++K++YrlGEd+vgt+++ +g
    KIAA0258   219 ERLMA-ATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEG 267  

                   dtpripctqvsvsLEtfEWdsLlsgyvesenGkvnpsyavrssassnrpt
                   +   + c+q+svsL+t+E              +v+p+y++r++a++  ++
    KIAA0258   268 T---VACLQFSVSLQTEE--------------RVQPEYQRRRGAGGVPSV 300  

                   rStlgsrdpempkpskvkvhaehheicldsrdrvsfsLpIPstatPtFiT
                   +               + +ha+h e+cl+++ r+sfsLpIP+++tP+F+T
    KIAA0258   301 S---------------HVTHARHQESCLHTT-RTSFSLPIPLSSTPGFCT 334  

                   sqvktdiFqlkWrLrFeFVtss<-*
                   ++v+     lkWrL+FeFVts+   
    KIAA0258   335 AIVS-----LKWRLHFEFVTSR    351  

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