hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21433534/chunk_1/iprscan-20080501-21433534.nocrc
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Query sequence: KIAA0256
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF01248.16.fs  Ribosomal protein L7Ae/L30e/S12e/Gadd4   110.3    7.1e-32   1
PF01248.16.ls  Ribosomal protein L7Ae/L30e/S12e/Gadd4   112.4    1.2e-30   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01248.16.fs    1/1     666   768 ..     1   101 []   110.3  7.1e-32
PF01248.16.ls    1/1     666   768 ..     1   101 []   112.4  1.2e-30

Alignments of top-scoring domains:
PF01248.16.fs: domain 1 of 1, from 666 to 768: score 110.3, E = 7.1e-32
                   *->daveellkkAlkagk.lvlGlkevtKalrrgeakLviiAedvspeek
                      ++++++ ++  ka+++lv+Gl+evtK+++ ++ k+vii++++++++ 
    KIAA0256   666    ERIYQKDPVRAKARRrLVMGLREVTKHMKLNKIKCVIISPNCEKIQS 712  

                   kk.id.TLlealcklseknVPyvrvpSkeeLGrliGkkrpdvsalaikdn
                   k ++d++L   +++++e+++P+v++ ++++LGr+++k +p vs+++i+++
    KIAA0256   713 KGgLDeALYNVIAMAREQEIPFVFALGRKALGRCVNKLVP-VSVVGIFNY 761  

                   gdskdlv<-*
                     +  l+   
    KIAA0256   762 FGAESLF    768  

PF01248.16.ls: domain 1 of 1, from 666 to 768: score 112.4, E = 1.2e-30
                   *->daveellkkAlkagk.lvlGlkevtKalrrgeakLviiAedvspeek
                      ++++++ ++  ka+++lv+Gl+evtK+++ ++ k+vii++++++++ 
    KIAA0256   666    ERIYQKDPVRAKARRrLVMGLREVTKHMKLNKIKCVIISPNCEKIQS 712  

                   kk.id.TLlealcklseknVPyvrvpSkeeLGrliGkkrpdvsalaikdn
                   k ++d++L   +++++e+++P+v++ ++++LGr+++k +p vs+++i+++
    KIAA0256   713 KGgLDeALYNVIAMAREQEIPFVFALGRKALGRCVNKLVP-VSVVGIFNY 761  

                   gdskdlv<-*
                     +  l+   
    KIAA0256   762 FGAESLF    768  

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