hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21415833/chunk_1/iprscan-20080501-21415833.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0255 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02990.7.ls Endomembrane protein 70 1224.8 0 1 PF02990.7.fs Endomembrane protein 70 1222.9 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02990.7.fs 1/1 104 650 .. 1 607 [] 1222.9 0 PF02990.7.ls 1/1 104 650 .. 1 607 [] 1224.8 0 Alignments of top-scoring domains: PF02990.7.fs: domain 1 of 1, from 104 to 650: score 1222.9, E = 0 *->epYeYYserLpFCrPekgtiekksEsLGYEVLfGDRivnSpYklkfl +pYeYYs LpFC+P+k i++k+E+LG EVL+GDRivn+p+++ ++ KIAA0255 104 LPYEYYS--LPFCQPSK--ITYKAENLG-EVLRGDRIVNTPFQVLMN 145 eekecevlCkvkkypldkltkedvklfrkaIekeYyvqwliDnLPvatfv +ek+cevlC ++++p+ +lt e+++l++++I+++Yyv+++ DnLPvat++ KIAA0255 146 SEKKCEVLCSQSNKPV-TLTVEQSRLVAERITEDYYVHLIADNLPVATRL 194 gkvdnkd......ykgvgfesGfplGeqgidieAcplnnlyKteeKyylf + + n+d+++++++k+v+fe+G++lG++ +++K+yl+ KIAA0255 195 ELYSNRDsddkkkEKDVQFEHGYRLGFT--------------DVNKIYLH 230 nHldfvieYHdrdndddqlesyRivgieVkprSvkhsselknde.stCsl nHl f+++YH++d+++dq+++yR+v++eV p+S++ + +lk+de+s+C+l KIAA0255 231 NHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLE-DLKADEkSSCTL 279 tskyssspqeldEgkendgEleltFTYSVkWkesdvkWasRWDkYLdsgf +++++sspqe+d+ ken +l+FTYSV+W+esd+kWasRWD+YL+ KIAA0255 280 PEGTNSSPQEIDPTKEN----QLYFTYSVHWEESDIKWASRWDTYLT--- 322 fDmhdlqIHWFSIiNSlviVlFLsGiVsmIlmRTLrrDiarYneldedee m d+qIHWFSIiNS+v+V+FLsGi+smI++RTLr+Dia+Yn++d++e KIAA0255 323 --MSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDIE- 369 aeGIEteDDlddDaqEEsGWKLVHGDVFRpPrPNLFnpmLLSalvGsGvQ D++EEsGWKLVHGDVFRpP+ +pm+LS l+GsG+Q KIAA0255 370 ------------DTMEESGWKLVHGDVFRPPQ----YPMILSSLLGSGIQ 403 lllmvlvtivfAclGfLsPsnRGsLlTaaivlYaltGfvAGYvSarlYkt l++m+l++i+ A+lG+LsPs+RG+L+T+a++l++++G+++G+ ++rlY+t KIAA0255 404 LFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRT 453 fkGkrkkWkrnliLTaflfPGivFliffvLNfvlWgkgSSgAvPFgTmva +kG+ +Wk+ +++Ta+l+PG+vF+i+fvLN+++Wgk+SSgAvPF Tmva KIAA0255 454 LKGH--RWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVA 501 LlllWflvsvPLtflGgivGfNIPLPQRkragefehPvRTNqIPRqIPeR Ll++Wf++s+PL++lG+++Gf Rk+++ ++PvRTNqIPRqIPe KIAA0255 502 LLCMWFGISLPLVYLGYYFGF------RKQPY--DNPVRTNQIPRQIPE- 542 qkWYlsplpgilmGGiLPFGaIfIELfFIftSlWlhkTTiYYmFGFLFlV q+WY+++++gilm+GiLPFGa+fIELfFIf+++W+++ +YY+FGFLFlV KIAA0255 543 QRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQ--FYYLFGFLFLV 590 FiILvvvcsevtIvlTYFqLRFCaEDKVVRYrWWWRSFltsGfStAvYvF FiILvv+cs+++Iv++YFqL CaED YrWWWR+Fl+sG ++A+Yv+ KIAA0255 591 FIILVVSCSQISIVMVYFQL--CAED----YRWWWRNFLVSG-GSAFYVL 633 lYSifYfftKlkisGfi<-* +Y+ifYf++Kl+i +fi KIAA0255 634 VYAIFYFVNKLDIVEFI 650 PF02990.7.ls: domain 1 of 1, from 104 to 650: score 1224.8, E = 0 *->epYeYYserLpFCrPekgtiekksEsLGYEVLfGDRivnSpYklkfl +pYeYYs LpFC+P+k i++k+E+LG EVL+GDRivn+p+++ ++ KIAA0255 104 LPYEYYS--LPFCQPSK--ITYKAENLG-EVLRGDRIVNTPFQVLMN 145 eekecevlCkvkkypldkltkedvklfrkaIekeYyvqwliDnLPvatfv +ek+cevlC ++++p+ +lt e+++l++++I+++Yyv+++ DnLPvat++ KIAA0255 146 SEKKCEVLCSQSNKPV-TLTVEQSRLVAERITEDYYVHLIADNLPVATRL 194 gkvdnkd......ykgvgfesGfplGeqgidieAcplnnlyKteeKyylf + + n+d+++++++k+v+fe+G++lG++ +++K+yl+ KIAA0255 195 ELYSNRDsddkkkEKDVQFEHGYRLGFT--------------DVNKIYLH 230 nHldfvieYHdrdndddqlesyRivgieVkprSvkhsselknde.stCsl nHl f+++YH++d+++dq+++yR+v++eV p+S++ + +lk+de+s+C+l KIAA0255 231 NHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLE-DLKADEkSSCTL 279 tskyssspqeldEgkendgEleltFTYSVkWkesdvkWasRWDkYLdsgf +++++sspqe+d+ ken +l+FTYSV+W+esd+kWasRWD+YL+ KIAA0255 280 PEGTNSSPQEIDPTKEN----QLYFTYSVHWEESDIKWASRWDTYLT--- 322 fDmhdlqIHWFSIiNSlviVlFLsGiVsmIlmRTLrrDiarYneldedee m d+qIHWFSIiNS+v+V+FLsGi+smI++RTLr+Dia+Yn++d++e KIAA0255 323 --MSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDIE- 369 aeGIEteDDlddDaqEEsGWKLVHGDVFRpPrPNLFnpmLLSalvGsGvQ D++EEsGWKLVHGDVFRpP+ +pm+LS l+GsG+Q KIAA0255 370 ------------DTMEESGWKLVHGDVFRPPQ----YPMILSSLLGSGIQ 403 lllmvlvtivfAclGfLsPsnRGsLlTaaivlYaltGfvAGYvSarlYkt l++m+l++i+ A+lG+LsPs+RG+L+T+a++l++++G+++G+ ++rlY+t KIAA0255 404 LFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRT 453 fkGkrkkWkrnliLTaflfPGivFliffvLNfvlWgkgSSgAvPFgTmva +kG+ +Wk+ +++Ta+l+PG+vF+i+fvLN+++Wgk+SSgAvPF Tmva KIAA0255 454 LKGH--RWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVA 501 LlllWflvsvPLtflGgivGfNIPLPQRkragefehPvRTNqIPRqIPeR Ll++Wf++s+PL++lG+++Gf Rk+++ ++PvRTNqIPRqIPe KIAA0255 502 LLCMWFGISLPLVYLGYYFGF------RKQPY--DNPVRTNQIPRQIPE- 542 qkWYlsplpgilmGGiLPFGaIfIELfFIftSlWlhkTTiYYmFGFLFlV q+WY+++++gilm+GiLPFGa+fIELfFIf+++W+++ +YY+FGFLFlV KIAA0255 543 QRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQ--FYYLFGFLFLV 590 FiILvvvcsevtIvlTYFqLRFCaEDKVVRYrWWWRSFltsGfStAvYvF FiILvv+cs+++Iv++YFqL CaED YrWWWR+Fl+sG ++A+Yv+ KIAA0255 591 FIILVVSCSQISIVMVYFQL--CAED----YRWWWRNFLVSG-GSAFYVL 633 lYSifYfftKlkisGfi<-* +Y+ifYf++Kl+i +fi KIAA0255 634 VYAIFYFVNKLDIVEFI 650 //